Run ASV and display results

[flying-sheep]

compare:

• https://github.com/HaoZeke/asv-numpy

• https://github.com/anderspitman/autobencher

• https://github.com/JuliaCI/Nanosoldier.jl

• Backfill for tags

   git tag --list --sort=version:refname '*.*.*' | asv run HASHFILE:-
  

• Interactive use with PRs:

  1. Bless a PR’s last commit and somehow send webhook
  2. Update base branch and fetch commit: git fetch origin main:main $sha
  3. [main, $sha] | str join "\n" | asv run HASHFILE:- (or just run on one commit if main exists)
  4. asv compare --only-changed main $sha will be empty if no changes, otherwise have a markdown table as result
  Example result without --only-changed

  All benchmarks:

  Change	Before [a4786471]	After [5da3c619] <pull/1348/head>	Ratio	Benchmark (Parameter)
  	99.9M	101M	1.01	readwrite.H5ADBackedWriteSuite.peakmem_write_compressed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	100M	100M	1	readwrite.H5ADBackedWriteSuite.peakmem_write_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	395±2ms	397±3ms	1.01	readwrite.H5ADBackedWriteSuite.time_write_compressed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	118±0.5ms	117±1ms	1	readwrite.H5ADBackedWriteSuite.time_write_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	15.3828125	15.6953125	1.02	readwrite.H5ADBackedWriteSuite.track_peakmem_write_compressed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	15.35546875	15.37109375	1	readwrite.H5ADBackedWriteSuite.track_peakmem_write_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	91214354	91214570	1	readwrite.H5ADInMemorySizeSuite.track_actual_in_memory_size('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	23564294	23564294	1	readwrite.H5ADInMemorySizeSuite.track_in_memory_size('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	5.26M	5.26M	1	readwrite.H5ADReadSuite.mem_read_backed_object('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	23.6M	23.6M	1	readwrite.H5ADReadSuite.mem_readfull_object('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	87.5M	87.7M	1	readwrite.H5ADReadSuite.peakmem_read_backed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	107M	107M	1	readwrite.H5ADReadSuite.peakmem_read_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	78.1±1ms	77.2±0.3ms	0.99	readwrite.H5ADReadSuite.time_read_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	1.1241426611796983	1.129467373760664	1	readwrite.H5ADReadSuite.track_read_full_memratio('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	111M	111M	1	readwrite.H5ADWriteSuite.peakmem_write_compressed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	111M	110M	1	readwrite.H5ADWriteSuite.peakmem_write_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	336±3ms	335±2ms	1	readwrite.H5ADWriteSuite.time_write_compressed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	60.5±0.8ms	59.1±0.7ms	0.98	readwrite.H5ADWriteSuite.time_write_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	7.5	7.5	1	readwrite.H5ADWriteSuite.track_peakmem_write_compressed('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	6.75	7.0	1.04	readwrite.H5ADWriteSuite.track_peakmem_write_full('http://falexwolf.de/data/pbmc3k_raw.h5ad')
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem((10000, 10000), array([False, True, True, ..., True, True, True]))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem((10000, 10000), slice(0, 1000, None))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem((10000, 10000), slice(0, 9000, None))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem((10000, 10000), slice(None, 9000, -1))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem((10000, 10000), slice(None, None, 2))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem_adata((10000, 10000), array([False, True, True, ..., True, True, True]))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem_adata((10000, 10000), slice(0, 1000, None))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem_adata((10000, 10000), slice(0, 9000, None))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem_adata((10000, 10000), slice(None, 9000, -1))
  	119M	119M	1	sparse_dataset.SparseCSRContiguousSlice.peakmem_getitem_adata((10000, 10000), slice(None, None, 2))
  	284±3ms	286±2ms	1.01	sparse_dataset.SparseCSRContiguousSlice.time_getitem((10000, 10000), array([False, True, True, ..., True, True, True]))
  	609±4μs	615±30μs	1.01	sparse_dataset.SparseCSRContiguousSlice.time_getitem((10000, 10000), slice(0, 1000, None))
  	4.05±0.08ms	3.98±0.06ms	0.98	sparse_dataset.SparseCSRContiguousSlice.time_getitem((10000, 10000), slice(0, 9000, None))
  	274±2ms	277±2ms	1.01	sparse_dataset.SparseCSRContiguousSlice.time_getitem((10000, 10000), slice(None, 9000, -1))
  	1.35±0.01s	1.36±0s	1	sparse_dataset.SparseCSRContiguousSlice.time_getitem((10000, 10000), slice(None, None, 2))
  	168±2μs	166±1μs	0.99	sparse_dataset.SparseCSRContiguousSlice.time_getitem_adata((10000, 10000), array([False, True, True, ..., True, True, True]))
  	45.0±0.7μs	47.4±1μs	1.05	sparse_dataset.SparseCSRContiguousSlice.time_getitem_adata((10000, 10000), slice(0, 1000, None))
  	44.9±0.3μs	46.6±0.4μs	1.04	sparse_dataset.SparseCSRContiguousSlice.time_getitem_adata((10000, 10000), slice(0, 9000, None))
  	45.2±0.8μs	46.1±0.4μs	1.02	sparse_dataset.SparseCSRContiguousSlice.time_getitem_adata((10000, 10000), slice(None, 9000, -1))
  	45.4±1μs	46.1±0.6μs	1.02	sparse_dataset.SparseCSRContiguousSlice.time_getitem_adata((10000, 10000), slice(None, None, 2))