Issues

• Add verbose option

  rhpvorderman/sequali#262 · Filter by author bagnacan opened on Apr 13, 2026
  2

• Simplify by four adapter matcher code when GCC15 becomes standard

  rhpvorderman/sequali#261 · Filter by author rhpvorderman opened on Mar 31, 2026

• Support for PacBio HiFi reads

  help wanted
  rhpvorderman/sequali#258 · Filter by author sanyalab opened on Mar 7, 2026
  1

• Detect when running under a non-interactive session and do not display progress bar

  rhpvorderman/sequali#257 · Filter by author hexylena opened on Dec 17, 2025
  1

• Check article algorithm on nanopore adapter detection for porechop ABI

  rhpvorderman/sequali#256 · Filter by author rhpvorderman opened on Dec 8, 2025

• Legend issue with Per position quality percentiles plots

  rhpvorderman/sequali#255 · Filter by author pontushojer opened on Oct 7, 2025
  3

• Separate out Quality and Base content metrics

  rhpvorderman/sequali#229 · Filter by author rhpvorderman opened on May 21, 2025

• Per position plots have a tail that is only supported by very few long reads

  rhpvorderman/sequali#215 · Filter by author rhpvorderman opened on Nov 29, 2024
  2

• Reconsider color map for phred qualities

  help wanted
  rhpvorderman/sequali#214 · Filter by author rhpvorderman opened on Nov 29, 2024

• Add extensive user guides on how to interpret the results

  rhpvorderman/sequali#213 · Filter by author rhpvorderman opened on Nov 29, 2024

• Improvement: HiFi smrtbell adapter detection

  help wanted
  rhpvorderman/sequali#196 · Filter by author Sebastien-Raguideau opened on Oct 4, 2024
  5

• Invalid character found unclear on whitespace characters.

  rhpvorderman/sequali#193 · Filter by author rhpvorderman opened on Oct 2, 2024

• Improve overrepresented sequence sampling so common genome repeats show up less.

  rhpvorderman/sequali#173 · Filter by author rhpvorderman opened on Jun 10, 2024
  4

• What's the meaning of adapter content?

  rhpvorderman/sequali#138 · Filter by author dudududu12138 opened on Apr 22, 2024
  6