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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -103,11 +103,18 @@ cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \
103103| uplot bar -d ' ' -t " The number of human gene annotations per chromosome" -c blue
104104```
105105
106- ## Usage
106+ ##
107107
108- ### file
108+ | command | short | |
109+ | -----------| -------| ----------------------------------------|
110+ | barplot | bar | draw a horizontal barplot |
111+ | histogram | hist | draw a horizontal histogram |
112+ | lineplot | line | draw a line chart |
113+ | lineplots | lines | draw a line chart with multiple series |
114+ | scatter | s | draw a scatter plot |
115+ | density | d | draw a density plot |
116+ | boxplot | box | draw a horizontal boxplot |
109117
110- ### stream
111118
112119### help
113120
@@ -133,14 +140,22 @@ Options:
133140uplot colors
134141```
135142
136-
137143## Development
138144
139- Let's keep it simple.
145+ ``` sh
146+ git clone https://github.com/your_name/GR.rb # Clone the Git repo
147+ cd GR.rb
148+ bundle install # Install the gem dependencies
149+ bundle exec rake test # Run the test
150+ bundle exec rake install # Installation from source code
151+ ```
140152
141153## Contributing
142154
143- Bug reports and pull requests are welcome on GitHub at [ https://github.com/kojix2/youplot ] ( https://github.com/kojix2/youplot ) .
155+ * [ Report bugs] ( https://github.com/kojix2/youplot/issues )
156+ * Fix bugs and [ submit pull requests] ( https://github.com/kojix2/youplot/pulls )
157+ * Write, clarify, or fix documentation
158+ * Suggest or add new features
144159
145160## License
146161
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