2024-09 docs fixes (#1385)

Author: mpharrigan

docs/bloq_infra.rst

@@ -24,7 +24,8 @@ types (``Register``), and algorithms (``CompositeBloq``).
    :maxdepth: 1
    :caption: Quantum Computer Architectures:
 
-   surface_code/azure_cost_model.ipynb
+   surface_code/physical_cost_model.ipynb
+   surface_code/beverland_et_al_model.ipynb
    surface_code/thc_compilation.ipynb
    surface_code/msft_resource_estimator_interop.ipynb
 
@@ -35,6 +36,7 @@ types (``Register``), and algorithms (``CompositeBloq``).
    _infra/composite_bloq.ipynb
    cirq_interop/cirq_interop.ipynb
    cirq_interop/t_complexity.ipynb
+   qref_interop/bartiq_demo.ipynb
    _infra/gate_with_registers.ipynb
    drawing/graphviz.ipynb
    drawing/musical_score.ipynb

qualtran/Protocols.ipynb

@@ -33,7 +33,7 @@
     "\n",
     "### Call Graph\n",
     "\n",
-    "You can get a directed-acyclic graph representing the hierarchical decomposition of bloqs by calling `bloq.call_graph()` or direct callees with `bloq.bloq_counts()`. Additional functionality is contained in the `qualtran.resource_counting` module. To implement this protocol, bloq authors can override `Bloq.build_call_graph(...)`. The default fallback uses the decomposition protocol and `build_cbloq_call_graph(...)`. See the full [call graph protocol documentation](./resource_counting/bloq_counts.ipynb) for details.\n",
+    "You can get a directed-acyclic graph representing the hierarchical decomposition of bloqs by calling `bloq.call_graph()` or direct callees with `bloq.bloq_counts()`. Additional functionality is contained in the `qualtran.resource_counting` module. To implement this protocol, bloq authors can override `Bloq.build_call_graph(...)`. The default fallback uses the decomposition protocol and `build_cbloq_call_graph(...)`. See the full [call graph protocol documentation](./resource_counting/call_graph.ipynb) for details.\n",
     "\n",
     "### Tensor\n",
     "\n",
@@ -65,7 +65,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.9"
+   "version": "3.11.8"
   }
  },
  "nbformat": 4,