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Fix README.rst → README.md (#1217)
Fix a couple of instances where the file name `README.rst` was not updated when the file was renamed.
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MANIFEST.in

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include LICENSE
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include MANIFEST.in
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include NOTICE
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include README.rst
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include README.md
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include dev_tools/requirements/deps/runtime.txt
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include dev_tools/requirements/deps/resource_estimates_runtime.txt
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include setup.py

setup.py

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# The readme file is used as the long_description:
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long_description = '===========\n' + 'OpenFermion\n' + '===========\n\n'
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with open('README.rst', 'r', encoding='utf-8') as readme:
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with open('README.md', 'r', encoding='utf-8') as readme:
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long_description += readme.read()
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# Read in package requirements.txt.

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