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Fix repair_metadata OOM on large repositories #1636

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Run time

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Job	Run time
check-changes	7s
check-commits	13s
sanity / sanity	18s
lint / lint	17s
docs / changelog	6s
docs / docs / build	1m 5s
build / build	1m 20s
test / test (lowerbounds)	11m 59s
test / test (pulp)	11m 39s
test / test (s3)	13m 10s
test / test (azure)	13m 2s
ready-to-ship	4s
deprecations	4s
	53m 24s