Repositories list

• jsbml

  Public
  JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Mar…

  javaapilibrary+ 4

  javaapilibraryparser-librarymodelingsystems-biologysbml

  Java

  •

  GNU Lesser General Public License v2.1

  •2727 forks•4242 stars•66 issues•33 pull requests•Updated Apr 24, 2026Apr 24, 2026

• vue3-sbml-validator

  Public
  vue3 component that validates SBML files

  Vue

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 10, 2026Apr 10, 2026

• libsbml

  Public
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers langua…

  apilibrarysystems-biology+ 2

  apilibrarysystems-biologylibsbmlsbml

  C++

  •

  Other

  •3131 forks•5656 stars•5050 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• python-libsbml

  Public
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.

  pythonpackagepython3+ 2

  pythonpackagepython3libsbmlsbml

  Python

  •

  Other

  •77 forks•2323 stars•88 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• sbmlteam.github.io

  Public
  The source code and issue tracker for the SBML.org website.

  simulationxmlsystems-biology+ 4

  simulationxmlsystems-biologystandardssimulation-modelingsbmlsimulation-model

  HTML

  •

  GNU Lesser General Public License v2.1

  •55 forks•1111 stars•1919 issues•00 pull requests•Updated Feb 12, 2026Feb 12, 2026

• sbml-specifications

  Public
  The specification documents for SBML.

  TeX

  •22 forks•77 stars•3232 issues•33 pull requests•Updated Feb 3, 2026Feb 3, 2026

• sbml-test-suite

  Public
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a softwar…

  testingsimulationsystems-biology+ 7

  testingsimulationsystems-biologytest-automationodestochastictesting-toolssbmltesting-frameworksbml-models

  JavaScript

  •

  Other

  •1313 forks•2626 stars•99 issues•11 pull request•Updated Dec 3, 2025Dec 3, 2025

• .github

  Public
  Special repository to allow general README, as well as link to COMBINE funding.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 27, 2025Oct 27, 2025

• libCombine

  Public
  a C++ library for working with the COMBINE Archive format

  C++

  •

  BSD 2-Clause "Simplified" License

  •77 forks•88 stars•1111 issues•11 pull request•Updated Oct 18, 2025Oct 18, 2025

• moccasin

  Public
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.

  pythonmatlabconversion+ 5

  pythonmatlabconversionsystems-biologyodedifferential-equationsode-modelsbml

  Python

  •

  Other

  •22 forks•1313 stars•2525 issues•11 pull request•Updated Aug 21, 2024Aug 21, 2024

• deviser

  Public
  Design Explorer and Viewer for Iterative SBML Enhancement of Representations

  pythonautomationcode-generator+ 5

  pythonautomationcode-generatorxmlsystems-biologycode-generationlibsbmlsbml

  C++

  •

  GNU Lesser General Public License v2.1

  •55 forks•66 stars•3232 issues•22 pull requests•Updated Apr 22, 2024Apr 22, 2024

• libSBML-dependencies

  Public
  Set of dependencies for compiling libSBML

  automationvisual-studiocmake+ 4

  automationvisual-studiocmakelibsbmlbatch-filessbmlcmake-script

  C

  •

  Other

  •11 fork•33 stars•00 issues•00 pull requests•Updated Oct 23, 2023Oct 23, 2023

• QtDeviser

  Public
  DEVISER Edit, an UI for defining DEVISER input files

  qtxmlcode-generation+ 3

  qtxmlcode-generationlibsbmlsbmlsbml-l3

  NSIS

  •

  GNU Lesser General Public License v2.1

  •00 forks•33 stars•00 issues•00 pull requests•Updated Oct 7, 2023Oct 7, 2023

• SBMLToolbox

  Public
  An open-source toolbox for working with SBML in MATLAB

  simulationmatlabsystems-biology+ 1

  simulationmatlabsystems-biologysbml

  MATLAB

  •

  Other

  •11 fork•22 stars•00 issues•00 pull requests•Updated Feb 6, 2023Feb 6, 2023

• specifications-bib

  Public
  TeX

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 15, 2022Aug 15, 2022

• specifications-tex

  Public
  PostScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2022Apr 27, 2022

• liblx

  Public
  The XML parser portion of LibSBML as a separate library.

  C++

  •

  Other

  •22 forks•00 stars•55 issues•22 pull requests•Updated Oct 7, 2021Oct 7, 2021

• sbml-spatial-models

  Public
  Repository of models to test exchange of sbml-spatial models.

  sbml

  sbml

  MIT License

  •22 forks•55 stars•00 issues•11 pull request•Updated Sep 17, 2021Sep 17, 2021

• SBMLreporter

  Public
  SBMLreporter provides a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model commu…

  sbml

  sbml

  Java

  •

  GNU Lesser General Public License v2.1

  •11 fork•44 stars•55 issues•00 pull requests•Updated Aug 17, 2021Aug 17, 2021

• sbml-level-3-paper-overleaf

  Public
  Copy of Overleaf project for the SBML Level 3 paper submitted to MSB

  sbml

  sbml

  TeX

  •

  Creative Commons Attribution 4.0 International

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 25, 2020Jun 25, 2020

• logos-and-promos

  Public
  SBML logo artwork and their terms of use

  sbml

  sbml

  PostScript

  •00 forks•11 star•00 issues•00 pull requests•Updated May 6, 2020May 6, 2020

• sbml-level-3-paper

  Public
  Overall repository for the SBML Level 3 paper submitted to MSB

  sbml

  sbml

  TeX

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2020Apr 27, 2020

• sbml-level-3-paper-response-letter

  Public
  Response to reviewers for SBML Level 3 paper submitted to MSB

  sbml

  sbml

  TeX

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2020Apr 27, 2020

• sbml-level-3-paper-diff

  Public
  Setup for running latexdiff on the SBML Level 3 paper

  sbml

  sbml

  Makefile

  •

  GNU Lesser General Public License v2.1

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2020Apr 27, 2020

• libsbml-build-scripts

  Public
  Scripts and utilities used to build and deploy a libSBML release

  sbml

  sbml

  Makefile

  •

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 13, 2020Mar 13, 2020

• cdroms-2003

  Public
  Archive of CD-ROMS we produced in 2003

  HTML

  •

  GNU Lesser General Public License v2.1

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2020Mar 11, 2020

• template

  Public template
  Template repository for software projects by the SBML Team

  template-project

  template-project

  Shell

  •

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 11, 2020Mar 11, 2020

• jib-paper-2019

  Public
  Paper published in the Journal of Integrative Bioinformatics in 2019

  TeX

  •

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 10, 2020Mar 10, 2020

• mathml-tests

  Public
  Tests for infix-to-mathML and mathML-to-infix for both libsbml and jsbml.

  sbml

  sbml

  C++

  •

  Other

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 27, 2020Feb 27, 2020

• labels-try-2

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2020Feb 26, 2020