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    258 repositories

    • brc_hazel_training

      Public
      Repository to share the materials from the BRZ Hazel training with the attendees.
      HTML
      •
      MIT License
      •0•3•0•0•Updated Apr 23, 2026Apr 23, 2026

    • metag_topic_modeling

      Public
      topic modeling approaches for metagenomics
      Jupyter Notebook
      •1•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • vaginal_genome_assembly

      Public
      assembly for vaginal genomes from Dr. Melissa Herbst-Kralovetz
      Jupyter Notebook
      •
      MIT License
      •0•0•0•1•Updated Nov 11, 2025Nov 11, 2025

    • hurwitzlab.github.io

      Public
      Website for the Hurwitz Lab
      CSS
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • fmt_viruses

      Public
      detecting viruses in FMT
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • be434-Spring2025

      Public
      Python
      •
      MIT License
      •25•0•0•3•Updated May 3, 2025May 3, 2025

    • install_chapel_hpc

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • 2025_find_viruses

      Public
      viral pipeline
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • be487-fall-2024

      Public
      metagenomics 487/587
      Jupyter Notebook
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • CI2025

      Public
      Applied Cyberinfrastructure course at UA
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • biosystems-spring2025

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • chapel_metag_pipeline

      Public
      metagenomics workflow using chapel
      0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • be434-Spring2024

      Public
      Jupyter Notebook
      •
      MIT License
      •21•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • phage_detection_benchmarks

      Public
      Code used to benchmark metagenomic phage detection tools.
      Python
      •
      MIT License
      •1•3•0•1•Updated Mar 3, 2024Mar 3, 2024

    • Simulated_metagenomes_generator

      Public
      Pipeline to generate simulated metagenome of known composition using InSilicoSeq
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • mash

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•2•Updated Jul 6, 2023Jul 6, 2023

    • planet-microbe-functional-annotation

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Jul 6, 2023Jul 6, 2023

    • planet-microbe-app

      Public
      Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.
      Elm
      •
      MIT License
      •3•1•0•19•Updated Jun 21, 2023Jun 21, 2023

    • planet-microbe-semantic-web-analysis

      Public
      R
      •
      MIT License
      •0•2•0•0•Updated Jun 8, 2023Jun 8, 2023

    • elm-imicrobe-spa

      Public
      Elm
      •
      MIT License
      •4•10•0•19•Updated Jan 7, 2023Jan 7, 2023

    • b2_web

      Public
      B2 Web Interface (back/frontend)
      Elm
      •
      MIT License
      •0•0•0•6•Updated Dec 10, 2022Dec 10, 2022

    • WoundDB_app

      Public
      Shiny_App for the Wound DB
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 14, 2022Apr 14, 2022

    • planet-microbe-scripts

      Public
      Planet Microbe scripts and examples
      Python
      •2•0•0•0•Updated Dec 29, 2021Dec 29, 2021

    • planet-microbe-ontology

      Public
      Makefile
      •
      Other
      •1•1•2•0•Updated Dec 17, 2021Dec 17, 2021

    • planet-microbe-datapackages

      Public
      Data packages for the Planet Microbe project
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Dec 17, 2021Dec 17, 2021

    • appetizer

      Public
      Create the app.json for Stampede
      Elm
      •
      MIT License
      •1•4•0•0•Updated Nov 16, 2021Nov 16, 2021

    • planet-microbe-frictionless-data-package-paper

      Public
      Repository with all source code and data to generate the figures from the manuscript about the Planet Microbe Frictionless Data Packages.
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 1, 2021Nov 1, 2021

    • hurwitzLab

      Public
      R package with color palettes for HurwitzLab
      R
      •
      Other
      •0•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • WGCNA-of-Type-II-Diabetic-Skin

      Public
      WGCNA of Type II Diabetic Skin
      R
      •0•2•0•0•Updated Oct 18, 2021Oct 18, 2021

    • ppr_meta

      Public
      PPR Meta
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021
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