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    86 repositories

    • funtracks

      Public
      A data model for cell tracking with actions, undo history, and more!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•40•5•Updated Apr 24, 2026Apr 24, 2026

    • motile_tracker

      Public
      An application for interactive for tracking with motile
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•10•104•5•Updated Apr 23, 2026Apr 23, 2026

    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      machine-learningcomputer-visionpipeline
      machine-learningcomputer-visionpipelinemultidimensionalgunpowder
      Python
      •
      MIT License
      •58•89•13•1•Updated Apr 22, 2026Apr 22, 2026

    • finn

      Public
      finn is (not) napari
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•4•3•Updated Apr 20, 2026Apr 20, 2026

    • ilpy

      Public
      Unified python wrappers for popular ILP solvers
      ilp-solver
      ilp-solver
      Python
      •
      MIT License
      •3•6•3•0•Updated Apr 17, 2026Apr 17, 2026

    • structsvm

      Public
      Python
      •
      MIT License
      •1•1•0•1•Updated Apr 14, 2026Apr 14, 2026

    • motile

      Public
      Multi-Object Tracking with Integer Linear Equations
      Python
      •
      MIT License
      •4•39•12•6•Updated Apr 14, 2026Apr 14, 2026

    • daisy

      Public
      Block-wise task scheduling for large nD volumes.
      Python
      •
      MIT License
      •18•32•8•0•Updated Apr 14, 2026Apr 14, 2026

    • quac

      Public
      Quantitative Attributions with Counterfactuals
      Python
      •
      MIT License
      •1•3•6•2•Updated Apr 6, 2026Apr 6, 2026

    • spatial_graph

      Public
      A spatial graph datastructure for python
      Python
      •
      MIT License
      •2•10•6•2•Updated Apr 6, 2026Apr 6, 2026

    • latex_template

      Public
      A minimal LaTeX document to be used as a template for papers.
      TeX
      •2•1•0•0•Updated Mar 18, 2026Mar 18, 2026

    • tarflow

      Public
      Python
      •
      MIT License
      •32•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • morphix

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

    • funlib.geometry

      Public
      A package for Coordinates, Rois and common operations in Coordinate spaces
      Python
      •
      MIT License
      •4•1•0•0•Updated Feb 14, 2026Feb 14, 2026

    • funlib.persistence

      Public
      Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
      Python
      •
      MIT License
      •12•5•9•1•Updated Feb 14, 2026Feb 14, 2026

    • c_elegans_tracking

      Public
      Python
      •1•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • lsd-lite

      Public
      Simple LSD and affinity graph computation
      Python
      •
      MIT License
      •3•4•0•1•Updated Dec 10, 2025Dec 10, 2025

    • motile_tracker_bundled_app

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Dec 1, 2025Dec 1, 2025

    • attrackt

      Public
      Unsupervised Cell Tracking and Interactive Fine-Tuning
      Python
      •0•1•18•0•Updated Nov 14, 2025Nov 14, 2025

    • attrackt_experiments

      Public
      Attrackt Experiments
      0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • lsd

      Public
      🌈
      Python
      •
      MIT License
      •42•67•3•2•Updated Oct 10, 2025Oct 10, 2025

    • drosophila_neurotransmitters

      Public
      Neurotransmitter ground truth
      TeX
      •1•2•4•0•Updated Sep 26, 2025Sep 26, 2025

    • synister_malecns

      Public
      Neurotransmitter predictions on the Male CNS
      Jupyter Notebook
      •0•0•1•1•Updated Sep 2, 2025Sep 2, 2025

    • witty

      Public
      A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.
      Python
      •
      MIT License
      •1•3•0•0•Updated Aug 20, 2025Aug 20, 2025

    • zspace

      Public
      0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • sub_volume_renderer

      Public
      Multi-resolution chunked volume renderer
      Python
      •1•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • quac_experiments

      Public
      Experiments for the QuAC method
      Python
      •0•1•4•0•Updated Jul 8, 2025Jul 8, 2025

    • tree_view_sandbox

      Public
      A sandbox repo for developing a VisPy lineage tree viewer
      Python
      •1•0•0•1•Updated May 29, 2025May 29, 2025

    • quannectomics_paper

      Public
      Paper about using QuAC for connectomics discoveries
      TeX
      •2•0•0•0•Updated May 15, 2025May 15, 2025

    • blinx

      Public
      Python
      •2•4•5•0•Updated Apr 16, 2025Apr 16, 2025
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