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    • funtracks

      Public
      A data model for cell tracking with actions, undo history, and more!
      Python
      BSD 3-Clause "New" or "Revised" License
      14405Updated Apr 24, 2026Apr 24, 2026
    • An application for interactive for tracking with motile
      Python
      BSD 3-Clause "New" or "Revised" License
      5101045Updated Apr 23, 2026Apr 23, 2026
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      MIT License
      5889131Updated Apr 22, 2026Apr 22, 2026
    • finn

      Public
      finn is (not) napari
      Python
      BSD 3-Clause "New" or "Revised" License
      2443Updated Apr 20, 2026Apr 20, 2026
    • ilpy

      Public
      Unified python wrappers for popular ILP solvers
      Python
      MIT License
      3630Updated Apr 17, 2026Apr 17, 2026
    • structsvm

      Public
      Python
      MIT License
      1101Updated Apr 14, 2026Apr 14, 2026
    • motile

      Public
      Multi-Object Tracking with Integer Linear Equations
      Python
      MIT License
      439126Updated Apr 14, 2026Apr 14, 2026
    • daisy

      Public
      Block-wise task scheduling for large nD volumes.
      Python
      MIT License
      183280Updated Apr 14, 2026Apr 14, 2026
    • quac

      Public
      Quantitative Attributions with Counterfactuals
      Python
      MIT License
      1362Updated Apr 6, 2026Apr 6, 2026
    • A spatial graph datastructure for python
      Python
      MIT License
      21062Updated Apr 6, 2026Apr 6, 2026
    • A minimal LaTeX document to be used as a template for papers.
      TeX
      2100Updated Mar 18, 2026Mar 18, 2026
    • tarflow

      Public
      Python
      MIT License
      32000Updated Mar 11, 2026Mar 11, 2026
    • morphix

      Public
      Python
      MIT License
      0000Updated Mar 2, 2026Mar 2, 2026
    • A package for Coordinates, Rois and common operations in Coordinate spaces
      Python
      MIT License
      4100Updated Feb 14, 2026Feb 14, 2026
    • Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
      Python
      MIT License
      12591Updated Feb 14, 2026Feb 14, 2026
    • Python
      1000Updated Dec 17, 2025Dec 17, 2025
    • lsd-lite

      Public
      Simple LSD and affinity graph computation
      Python
      MIT License
      3401Updated Dec 10, 2025Dec 10, 2025
    • Python
      GNU General Public License v3.0
      0001Updated Dec 1, 2025Dec 1, 2025
    • attrackt

      Public
      Unsupervised Cell Tracking and Interactive Fine-Tuning
      Python
      01180Updated Nov 14, 2025Nov 14, 2025
    • Attrackt Experiments
      0000Updated Nov 5, 2025Nov 5, 2025
    • lsd

      Public
      🌈
      Python
      MIT License
      426732Updated Oct 10, 2025Oct 10, 2025
    • Neurotransmitter ground truth
      TeX
      1240Updated Sep 26, 2025Sep 26, 2025
    • Neurotransmitter predictions on the Male CNS
      Jupyter Notebook
      0011Updated Sep 2, 2025Sep 2, 2025
    • witty

      Public
      A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.
      Python
      MIT License
      1300Updated Aug 20, 2025Aug 20, 2025
    • zspace

      Public
      0000Updated Aug 4, 2025Aug 4, 2025
    • Multi-resolution chunked volume renderer
      Python
      1000Updated Jul 31, 2025Jul 31, 2025
    • Experiments for the QuAC method
      Python
      0140Updated Jul 8, 2025Jul 8, 2025
    • A sandbox repo for developing a VisPy lineage tree viewer
      Python
      1001Updated May 29, 2025May 29, 2025
    • Paper about using QuAC for connectomics discoveries
      TeX
      2000Updated May 15, 2025May 15, 2025
    • blinx

      Public
      Python
      2450Updated Apr 16, 2025Apr 16, 2025
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