Repositories list

• py2bit

  Public
  A python library for accessing 2bit files

  bioinformaticstwobit

  bioinformaticstwobit

  C

  •

  MIT License

  •99 forks•2121 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• pyBigWig

  Public
  A python extension for quick access to bigWig and bigBed files

  bigwigbigbedbioinfomatics

  bigwigbigbedbioinfomatics

  C

  •

  MIT License

  •5555 forks•243243 stars•1010 issues•11 pull request•Updated Jan 14, 2026Jan 14, 2026

• HiCMatrix

  Public
  Python

  •

  GNU General Public License v3.0

  •88 forks•1313 stars•00 issues•11 pull request•Updated Sep 4, 2025Sep 4, 2025

• deepTools

  Public
  Tools to process and analyze deep sequencing data.

  pythonbioinformaticsrna-seq+ 3

  pythonbioinformaticsrna-seqgenomicsngschip-seq

  Python

  •

  Other

  •221221 forks•759759 stars•162162 issues•1919 pull requests•Updated Jul 23, 2025Jul 23, 2025

• HiCExplorer

  Public
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

  pythonbioinformaticsgenomics+ 3

  pythonbioinformaticsgenomicsgalaxyhicchromosome-conformation-capture

  Python

  •

  GNU General Public License v3.0

  •7575 forks•270270 stars•160160 issues•00 pull requests•Updated Jul 17, 2025Jul 17, 2025

• pyGenomeTracks

  Public
  python module to plot beautiful and highly customizable genome browser tracks

  Python

  •

  GNU General Public License v3.0

  •127127 forks•878878 stars•2727 issues•77 pull requests•Updated Jul 10, 2024Jul 10, 2024

• github-actions

  Public archive
  Play around with github actions

  JavaScript

  •

  MIT License

  •11 fork•00 stars•00 issues•1212 pull requests•Updated Aug 16, 2023Aug 16, 2023

• Knight-Ruiz-Matrix-balancing-algorithm

  Public
  C++

  •44 forks•1010 stars•55 issues•11 pull request•Updated Apr 13, 2021Apr 13, 2021

• HiCBrowser

  Public
  Simple web browser to visualize HiC tracks

  visualizationdockerbioinformatics+ 5

  visualizationdockerbioinformaticsbrowsergenomicsepigeneticshi-chicexplorer

  JavaScript

  •

  GNU General Public License v2.0

  •55 forks•1919 stars•66 issues•22 pull requests•Updated Dec 12, 2019Dec 12, 2019

• hicBuildMatrixCpp

  Public
  C++ implementation of hicBuildMatrix

  C++

  •

  MIT License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Oct 16, 2019Oct 16, 2019

• docker-hicbrowser

  Public
  Docker container for easy deployment of the HiCBrowser

  Dockerfile

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2019Aug 11, 2019

• deeptools_intervals

  Public
  A python library for constructing interval trees with associated exon/annotation information

  bioinformaticsinterval-treegtf+ 1

  bioinformaticsinterval-treegtfbed

  C

  •

  MIT License

  •22 forks•66 stars•22 issues•00 pull requests•Updated Aug 7, 2019Aug 7, 2019

• docker-galaxy-hicexplorer

  Public
  Galaxy Docker Image for the HiCExplorer

  HTML

  •

  MIT License

  •33 forks•1111 stars•33 issues•00 pull requests•Updated Mar 3, 2019Mar 3, 2019