Repositories list

• GNPSDocumentation

  Public
  Documentation for GNPS and related tools as written in mkdocs

  metabolomicsgnpsnaturalproducts+ 1

  metabolomicsgnpsnaturalproductsmassspectrometery

  HTML

  •

  MIT License

  •9090 forks•4444 stars•3939 issues•66 pull requests•Updated Apr 8, 2026Apr 8, 2026

• MassIVEDocumentation

  Public
  Documentation for MassIVE workflows and Website

  bigdataproteomicsmassspectrometry

  bigdataproteomicsmassspectrometry

  Python

  •

  MIT License

  •66 forks•44 stars•44 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• CCMSWorkflowUtils

  Public
  CCMS Workflow Utilities

  Java

  •11 fork•00 stars•00 issues•22 pull requests•Updated Jul 4, 2025Jul 4, 2025

• CCMS-Integration-Tests

  Public
  Integration Testing Suite for CCMS Services

  Python

  •11 fork•11 star•44 issues•11 pull request•Updated Mar 28, 2025Mar 28, 2025

• MzTabUtils

  Public
  CCMS mzTab Utilties

  Java

  •00 forks•00 stars•22 issues•33 pull requests•Updated Oct 3, 2024Oct 3, 2024

• GNPS_Workflows

  Public
  Public Workflows at GNPS

  metabolomicsmass-spectrometrygnps+ 3

  metabolomicsmass-spectrometrygnpsmolecularnetworkingnaturalproductsuntargeted

  HTML

  •

  Other

  •4747 forks•6565 stars•246246 issues•3131 pull requests•Updated Jan 30, 2024Jan 30, 2024

• GNPS_TrainingTutorialModules

  Public
  Standard Tutorial Modules for GNPS Workshops

  metabolomicsgnpsnaturalproducts+ 1

  metabolomicsgnpsnaturalproductsmassspectrometry

  MIT License

  •88 forks•66 stars•66 issues•11 pull request•Updated Oct 11, 2023Oct 11, 2023

• CCMS-Workflow-Tools

  Public
  Standalone CCMS workflow tools

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2023Apr 3, 2023

• hpp_inspector

  Public
  Python

  •00 forks•00 stars•1010 issues•44 pull requests•Updated Jan 13, 2023Jan 13, 2023

• CCMSDeployments

  Public
  Deployment utilities for CCMS

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•22 stars•77 issues•00 pull requests•Updated Oct 21, 2022Oct 21, 2022

• csv-to-sqlite

  Public
  A command-line tool that copies data from CSV files into a SQLite database.

  Python

  •

  MIT License

  •1818 forks•00 stars•00 issues•00 pull requests•Updated May 10, 2022May 10, 2022

• generate_spectrum_index

  Public
  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Mar 24, 2022Mar 24, 2022

• MzTabConverter

  Public
  CCMS mzTab converters

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 10, 2020Nov 10, 2020

• workspace

  Public
  first push to github

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2020Jan 28, 2020

• ProteoSAFe

  Public
  JavaScript

  •

  Other

  •00 forks•00 stars•11 issue•11 pull request•Updated Dec 15, 2019Dec 15, 2019

• MassIVEKBWorkflows

  Public
  Python

  •11 fork•00 stars•00 issues•11 pull request•Updated May 20, 2019May 20, 2019

• param-medic

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 12, 2018Oct 12, 2018

• MassIVEWorkflows

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 8, 2018Feb 8, 2018

• CCMS-sps

  Public
  CCMS SPS Code Release for GNPS Manuscript

  C++

  •

  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 28, 2016Apr 28, 2016