Merge pull request #39 from leewujung/master

Reorganize all pages and add 2019 project page

Author: leewujung

.gitignore

@@ -1,2 +1,4 @@
+_site/
 .idea/
-_site/
+.DS_Store
+.gitignore~

_config.yml

@@ -5,12 +5,11 @@ description: Data Science + Oceanography<br>
              University of Washington<br>
              Aug 26-30, 2019 <br> <br>
 
-             Check out our <a href="https://oceanhackweek.github.io/wiki/">Wiki</a>
-             <br>for logistics and pre-event preparation!
+             Useful resources on the <a href="https://oceanhackweek.github.io/wiki/">Wiki</a>!
 
 # Banner button to lead to form, then schedule, then next year's website.
-banner_button_url: https://columbiauniversity.zoom.us/j/318805257
-banner_button_text: Join remotely during the event (via Zoom)!
+banner_button_url: projects_2019.html
+banner_button_text: 2019 Hack Projects
 
 
 baseurl: "" # the subpath of your site, e.g. /blog

_pages/applicants.md _pages/01-applicants.md_pages/applicants.md renamed to _pages/01-applicants.md

@@ -1,7 +1,7 @@
 ---
 layout: page
 title: 2019 Curriculum
-permalink: curriculum.html
+permalink: curriculum_2019.html
 ---
 
 **Oceanhackweek curriculum consists of hands-on tutorials, visual presentations and collaborative hack projects.** Tutorials and presentations will take place mostly in the mornings, with the afternoons devoted to project work. The tutorials will be based on the scientific Python stack, which is an ecosystem of interrelated Python packages for scientific computing and analysis. This year we focus on access strategies for diverse data systems and workflow for interoperating different types of ocean data and models.

_pages/hackweek.md _pages/02-hackweek.md_pages/hackweek.md renamed to _pages/02-hackweek.md

@@ -0,0 +1,88 @@
+---
+layout: page
+title: 2019 Hackweek Projects
+permalink: projects_2019.html
+---
+
+Oceanhackweek is not just about learning, it is also about using what is learned to create exciting new tools in collaboration with others. We strive to foster an inclusive and supportive learning environment based on the shared interests of all participants, and are proud to share outcome of the hack projects here.
+
+YouTube links to the final presentations are coming soon.
+
+
+---
+
+### Project: TMIFVP
+
+Template Matching to Identify Features in Vertical Profiles, or TMIFVP, is a tool designed to match and quantify the difference between a template profile and user-submitted data, clearly highlighting features for quality matching scores and location of problematic or interesting attributes. More broadly, this pipeline could be used to analyze and compare many types of graphs and profiles, including but not limited to: Michaelis-Menten population curves, Metabolomic and proteomic spectrographic peaks, and environmental time series data to identify outliers.
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-projects-TMIVP](https://github.com/oceanhackweek/ohw19-projects-TMIVP)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj1_TMIFVP.mp4)
+
+### Project: Trackpy
+
+This project allows Python beginners a way to easily link and visualize animal movement data with sensed oceanographic data and databases of mesoscale oceanographic features.
+
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-projects-Trackpy](https://github.com/oceanhackweek/ohw19-projects-Trackpy)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj2_TRACKPY.mp4)
+
+### Project: Isopy
+
+Isopy is a python package that allows users to calculate isosurfaces, and variables along isopycnals, from 3d datasets.
+
+**Github Page**: [https://github.com/oceanhackweek/DataAccess/tree/master/isopy](https://github.com/oceanhackweek/DataAccess/tree/master/isopy)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj3_ISOPY.mp4)
+
+### Project: Underwater Currency Counter
+
+Called, "a Semi Supervised Annotation Tool: Kickass AI to count sand dollars", the Underwater Currency Counter is an effort to train a deep object recognition algorithm to count sand dollars from benthic habitat imagery data collected from ROVs.
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-project-computer_vision_club](https://github.com/oceanhackweek/ohw19-project-computer_vision_club)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj4_SANDDOLLARS.mp4)
+
+### Project: Co-Locators
+
+This team aims to provide a way to Co-locate oceanographic data by establishing constraints. The tools they developed allow users to provide geospacial bounds in a temporal range to get an aggregated response of all available data.
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-project-co_locators](https://github.com/oceanhackweek/ohw19-project-co_locators)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj5_COLOCATORS.mp4)
+
+### Project: 21st Century Prediction of Fish Larvae Catch Using ML
+
+This project is a machine learning effort to predict fish larvae catch numbers.
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-project-CMIP6-larvae-ML](https://github.com/oceanhackweek/ohw19-project-CMIP6-larvae-ML)\
+**Presentation**: [video](https://youtube.com)
+
+### Project: Modeling Volcano Deformation at Axial Seamount
+
+A Jupyter notebook intended to teach and demonstrate to undergraduates about volcano and seafloor deformation, and how previous volcanic eruptions of Axial Seamount were used to forecast future eruptions. This notebook also allows students to forecast the next eruption themselves!
+
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj7_VOLCANOS.mp4)
+
+### Project: DataStreamSync
+
+The objective is to create an interface that allows to visualize the spectrogram and waveform of the fish sounds detected as well as the video and sonar data at the time of the detection.
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-projects-DataStreamSync](https://github.com/oceanhackweek/ohw19-projects-DataStreamSync)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj8_DataStreamSync.mp4)
+
+### Project: MLQC
+
+Applying machine learning techniques to QC timeseries data, and compare against established algorithmic approaches (e.g. QARTOD).
+
+**Github Page**: [https://github.com/oceanhackweek/ohw19-project-mlqc-for-timeseries](https://github.com/oceanhackweek/ohw19-project-mlqc-for-timeseries)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj9_MLQC.mp4)
+
+### Project: Working with Chlorophyll Data from the Cloud
+
+Notebooks demonstrating how to work with chlorophyll data including how to remotely access chlorophyll data from OceanData.sci, how to read the data, and how to compute local gradients in the measured values.
+
+**Github Page**: [https://github.com/oceanhackweek/DataAccess/tree/master/Chlorophyll](https://github.com/oceanhackweek/DataAccess/tree/master/Chlorophyll)\
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj10_CHLOROPHYLL.mp4)
+
+### Project: Amazon Fires
+
+A learning tool used to show Amazon data including bushfires, daily surface temperature over 10 years, El Nino events, and signals in river discharge.
+
+**Presentation**: [video](https://www.dropbox.com/sh/lqvin95rcqyq4tq/AAAbrhKHy-ZUDA9F47LUKFj-a?dl=0&preview=proj11_FIRES.mp4)

_pages/curriculum.md _pages/03-curriculum_2019.md_pages/curriculum.md renamed to _pages/03-curriculum_2019.md

@@ -1,6 +1,6 @@
 ---
 layout: page
-title: Organizing committee and instructors
+title: Organizing committee
 permalink: our-team.html
 description:
 team:
@@ -29,7 +29,7 @@ team:
       github_user: ocefpaf
 
     - name: Emilio Mayorga
-      title: Ocean data systems, IOOS 
+      title: Ocean data systems, IOOS
       affiliate: Senior Oceanographer,       APL, UW
       image_url: https://geohackweek.github.io/ghw2017/images/742403.jpg
       github_user: emiliom
@@ -40,13 +40,13 @@ team:
       image_url: https://avatars2.githubusercontent.com/u/1197350?s=400&v=4
       github_user: rabernat
 
-  - - name: Joseph Gum 
+  - - name: Joseph Gum
       title: Data science education, ship data
       affiliate: Data Analyst, Scripps
-      image_url: https://oceanhackweek.github.io/assets/images/jgum.jpg 
+      image_url: https://oceanhackweek.github.io/assets/images/jgum.jpg
       github_user: asx-
 
-    - name: Timothy Crone 
+    - name: Timothy Crone
       title: Pangeo, OOI
       affiliate: Associate Research Professor, LDEO, Columbia University
       image_url: https://avatars1.githubusercontent.com/u/5667194?s=400&v=4