diff --git a/src/build/_extensions.ts b/src/build/_extensions.ts
new file mode 100644
index 0000000000..51ca3772d8
--- /dev/null
+++ b/src/build/_extensions.ts
@@ -0,0 +1,2 @@
+// prettier-ignore
+export const BUILD_EXTENSIONS = [".ts", ".mjs", ".js", ".json", ".node", ".tsx", ".jsx"];
diff --git a/src/build/config.ts b/src/build/config.ts
index 0dcc69d1b8..b8a1909d01 100644
--- a/src/build/config.ts
+++ b/src/build/config.ts
@@ -1,6 +1,7 @@
 import type { Nitro, NitroImportMeta } from "nitro/types";
 import { pkgDir } from "nitro/meta";
 import { pathRegExp, toPathRegExp } from "../utils/regex.ts";
+import { BUILD_EXTENSIONS } from "./_extensions.ts";
 import { resolveBuildEnv } from "./env.ts";
 import { isUnenvId } from "./plugins/unenv.ts";
 
@@ -9,8 +10,7 @@ export type BaseBuildConfig = Awaited<ReturnType<typeof baseBuildConfig>>;
 const ROOT_ALIAS = "@";
 
 export async function baseBuildConfig(nitro: Nitro) {
-  // prettier-ignore
-  const extensions: string[] = [".ts", ".mjs", ".js", ".json", ".node", ".tsx", ".jsx" ];
+  const extensions: string[] = [...BUILD_EXTENSIONS];
 
   const isNodeless = nitro.options.node === false;
 
diff --git a/src/build/info.ts b/src/build/info.ts
index 86b9951702..e5f00feeec 100644
--- a/src/build/info.ts
+++ b/src/build/info.ts
@@ -1,4 +1,5 @@
 import type { Nitro, NitroBuildInfo, WorkerAddress } from "nitro/types";
+import { resolveModulePath } from "exsolve";
 import { join, relative, resolve } from "pathe";
 import { version as nitroVersion } from "nitro/meta";
 import { presetsWithConfig } from "../presets/_types.gen.ts";
@@ -7,6 +8,7 @@ import { mkdir, readFile, stat } from "node:fs/promises";
 import { dirname } from "node:path";
 import type { RolldownOutput } from "rolldown";
 import type { RollupOutput } from "rollup";
+import { BUILD_EXTENSIONS } from "./_extensions.ts";
 
 const NITRO_WELLKNOWN_DIR = "node_modules/.nitro";
 
@@ -59,7 +61,7 @@ export async function writeBuildInfo(
   nitro: Nitro,
   output: RolldownOutput | RollupOutput | undefined
 ): Promise<NitroBuildInfo> {
-  const serverEntryName = output?.output?.find((o) => o.type === "chunk" && o.isEntry)?.fileName;
+  const serverEntryName = resolveNitroServerEntry(nitro, output);
 
   const buildInfoPath = resolve(nitro.options.output.dir, "nitro.json");
   const buildInfo: NitroBuildInfo = {
@@ -117,3 +119,28 @@ export async function writeDevBuildInfo(nitro: Nitro, addr?: WorkerAddress): Pro
   };
   await writeFile(buildInfoPath, JSON.stringify(buildInfo, null, 2));
 }
+
+function resolveNitroServerEntry(
+  nitro: Nitro,
+  output: RolldownOutput | RollupOutput | undefined
+): string | undefined {
+  const entries = output?.output.filter((item) => item.type === "chunk" && item.isEntry) ?? [];
+  if (entries.length < 2) {
+    return entries[0]?.fileName;
+  }
+  const nitroEntry = resolve(
+    (!nitro.options.entry.startsWith("#") &&
+      resolveModulePath(nitro.options.entry, { try: true, extensions: BUILD_EXTENSIONS })) ||
+      nitro.options.entry
+  );
+  const match = entries.find(
+    (item) =>
+      item.type === "chunk" && !!item.facadeModuleId && resolve(item.facadeModuleId) === nitroEntry
+  );
+  if (!match) {
+    nitro.logger.warn(
+      `Could not find the output chunk for Nitro entry \`${nitro.options.entry}\`. Using \`${entries[0].fileName}\` as server entry.`
+    );
+  }
+  return (match || entries[0]).fileName;
+}
diff --git a/test/unit/build-info.test.ts b/test/unit/build-info.test.ts
new file mode 100644
index 0000000000..55e5613231
--- /dev/null
+++ b/test/unit/build-info.test.ts
@@ -0,0 +1,118 @@
+import { mkdtemp, readFile, realpath, rm, writeFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join, resolve } from "pathe";
+import { rolldown } from "rolldown";
+import type { RollupOutput } from "rollup";
+import type { Nitro } from "nitro/types";
+import { afterEach, beforeEach, describe, expect, it, vi } from "vitest";
+import { writeBuildInfo } from "../../src/build/info.ts";
+
+describe("writeBuildInfo", () => {
+  let rootDir: string;
+  let warn: ReturnType<typeof vi.fn>;
+
+  beforeEach(async () => {
+    rootDir = await realpath(await mkdtemp(join(tmpdir(), "nitro-build-info-")));
+    warn = vi.fn();
+    await writeFile(join(rootDir, "server.ts"), `export const server = "nitro server";\n`);
+    await writeFile(join(rootDir, "server.js"), `export const server = "unrelated entry";\n`);
+    await writeFile(join(rootDir, "exposed.ts"), `export const exposed = "exposed";\n`);
+  });
+
+  afterEach(async () => {
+    await rm(rootDir, { recursive: true, force: true });
+  });
+
+  function createNitro() {
+    return {
+      logger: { warn },
+      options: {
+        rootDir,
+        entry: join(rootDir, "server"),
+        output: {
+          dir: join(rootDir, ".output"),
+          serverDir: join(rootDir, ".output/server"),
+          publicDir: join(rootDir, ".output/public"),
+        },
+        commands: {},
+      },
+    } as unknown as Nitro;
+  }
+
+  async function buildInfoFor(entries: { fileName: string; facadeModuleId: string | null }[]) {
+    const output = {
+      output: entries.map((entry) => ({ type: "chunk", isEntry: true, ...entry })),
+    } as unknown as RollupOutput;
+
+    const info = await writeBuildInfo(createNitro(), output);
+    const saved = JSON.parse(await readFile(join(rootDir, ".output/nitro.json"), "utf8"));
+    expect(saved.serverEntry).toBe(info.serverEntry);
+    return info;
+  }
+
+  it("records Nitro's entry when another entry chunk appears first", async () => {
+    const info = await buildInfoFor([
+      { fileName: "_chunks/app.mjs", facadeModuleId: join(rootDir, "app/app.ts") },
+      { fileName: "index.mjs", facadeModuleId: join(rootDir, "server.ts") },
+    ]);
+    expect(info.serverEntry).toBe("server/index.mjs");
+    expect(warn).not.toHaveBeenCalled();
+  });
+
+  it("uses Nitro's entry even when the output name is customized", async () => {
+    const info = await buildInfoFor([
+      { fileName: "_chunks/app.mjs", facadeModuleId: join(rootDir, "app/app.ts") },
+      { fileName: "worker.mjs", facadeModuleId: join(rootDir, "server.ts") },
+    ]);
+    expect(info.serverEntry).toBe("server/worker.mjs");
+  });
+
+  it("falls back to the first entry with a warning when facade IDs are unavailable", async () => {
+    const info = await buildInfoFor([
+      { fileName: "worker.mjs", facadeModuleId: null },
+      { fileName: "index.mjs", facadeModuleId: null },
+    ]);
+    expect(info.serverEntry).toBe("server/worker.mjs");
+    expect(warn).toHaveBeenCalledOnce();
+  });
+
+  it("selects Nitro's entry from real Rolldown output with another entry first", async () => {
+    const build = await rolldown({
+      input: [join(rootDir, "exposed.ts"), join(rootDir, "server.ts")],
+    });
+    const output = await build.write({
+      dir: join(rootDir, ".output/server"),
+      entryFileNames: "[name].mjs",
+    });
+    await build.close();
+
+    const entries = output.output.filter((item) => item.type === "chunk" && item.isEntry);
+    expect(entries.map((item) => item.fileName)).toEqual(["exposed.mjs", "server.mjs"]);
+
+    const info = await writeBuildInfo(createNitro(), output);
+    expect(info.serverEntry).toBe("server/server.mjs");
+  });
+
+  it("distinguishes entry files with the same path stem", async () => {
+    const build = await rolldown({
+      input: { a: join(rootDir, "server.js"), b: join(rootDir, "server") },
+      resolve: { extensions: [".ts", ".js"] },
+    });
+    const output = await build.write({
+      dir: join(rootDir, ".output/server"),
+      entryFileNames: "[name].mjs",
+    });
+    await build.close();
+
+    const entries = output.output.flatMap((item) =>
+      item.type === "chunk" && item.isEntry ? [item] : []
+    );
+    expect(entries.map((item) => resolve(item.facadeModuleId!))).toEqual([
+      join(rootDir, "server.js"),
+      join(rootDir, "server.ts"),
+    ]);
+
+    const info = await writeBuildInfo(createNitro(), output);
+    expect(info.serverEntry).toBe("server/b.mjs");
+  });
+});