diff --git a/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/CHANGELOG.md b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/CHANGELOG.md new file mode 100644 index 000000000..40410d5c0 --- /dev/null +++ b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/CHANGELOG.md @@ -0,0 +1,3 @@ +## Unreleased + +Initial release. \ No newline at end of file diff --git a/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/README.md b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/README.md new file mode 100644 index 000000000..70c978c08 --- /dev/null +++ b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/README.md @@ -0,0 +1,24 @@ +# Betaarterivirus americense (PRRSV-2) nsp3-4-5 classification + + +## Dataset attributes + +| attribute | value | +| -------------------- | ---------------------------------------- | +| name | PRRSV-2 nsp3-4-5 clusters | +| refName | NC_038291.1-VR-2332 | +| refAccession | NC_038291.1 | + + +## Scope of this dataset + +This dataset uses the sequences of the ORF1 non structural protein 3, 4 and 5 to complement the ORF5 lineages classification when the whole genome of the virus is available as proposed by Baby et al., 2026. + + +## Authors and contacts + +For questions regarding the dataset, please contact the corresponding author of + +## What is Nextclade dataset + +Read more about Nextclade datasets in Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html diff --git a/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/genome_annotation.gff3 b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/genome_annotation.gff3 new file mode 100644 index 000000000..6626d4faa --- /dev/null +++ b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/genome_annotation.gff3 @@ -0,0 +1,4 @@ +##gff-version 3 +##sequence-region NC_038291.1-nsp3-4-5 1 1815 +NC_038291.1-nsp3-4-5 feature CDS 1 1815 . + 0 Parent=gene-ORF1;gene_name=nsp3-4-5;product=nsp3-4-5 +NC_038291.1-nsp3-4-5 feature gene 1 1815 . + . ID=gene-ORF1;gene_name=ORF1;Note=Partial ORF1 diff --git a/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/pathogen.json b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/pathogen.json new file mode 100644 index 000000000..de9122924 --- /dev/null +++ b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/pathogen.json @@ -0,0 +1,53 @@ +{ + "$schema": "https://raw.githubusercontent.com/nextstrain/nextclade/refs/heads/release/packages/nextclade-schemas/input-pathogen-json.schema.json", + "schemaVersion": "3.0.0", + "files": { + "reference": "reference.fasta", + "pathogenJson": "pathogen.json", + "genomeAnnotation": "genome_annotation.gff3", + "examples": "sequences.fasta", + "treeJson": "tree.json", + "readme": "README.md", + "changelog": "CHANGELOG.md" + }, + "attributes": { + "name": "Betaartivirus americense nsp3-4-5 classification", + "reference name": "NC_038291.1-nsp3-4-5", + "reference accession": "NC_038291.1" + }, + "qc": { + "missingData": { + "enabled": false, + "missingDataThreshold": 2000, + "scoreBias": 300 + }, + "snpClusters": { + "enabled": false, + "windowSize": 100, + "clusterCutOff": 5, + "scoreWeight": 50 + }, + "privateMutations": { + "cutoff": 25, + "enabled": true, + "typical": 10, + "weightLabeledSubstitutions": 2, + "weightReversionSubstitutions": 1, + "weightUnlabeledSubstitutions": 1 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 8 + }, + "frameShifts": { + "enabled": true + }, + "stopCodons": { + "enabled": true + } + }, + "compatibility": { + "cli": "3.0.0", + "web": "3.0.0" + } +} \ No newline at end of file diff --git a/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/reference.fasta b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/reference.fasta new file mode 100644 index 000000000..97bc499cc --- /dev/null +++ b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/reference.fasta @@ -0,0 +1,32 @@ +>NC_038291.1-nsp3-4-5 +GGAGGCCCACATCTCATGGCTGCCCTGCATGTTGCCTGCTCGATGGCTCTGCACATGCTT +GCTGGGATTTATGTGACTGCGGTGGGTTCTTGCGGCACCGGCACCAACGACCCGTGGTGC +GCTAACCCGTTTGCCGTCCCTGGCTACGGACCTGGCTCTCTCTGCACGTCCAGGTTGTGC +ATTTCCCAACACGGCCTTACCCTGCCCTTGACAGCACTTGTGGCGGGATTCGGTATTCAA +GAAATTGCCTTGGTCGTTTTGATTTTTGTTTCCATCGGAGGCATGGCTCATAGGTTGAGC +TGTAAGGCTGACATGCTGTGTGTTTTGCTTGCAATTGCCAGCTATGTTTGGGTACCTCTT +ACCTGGTTGCTTTGTGTGTTTCCTTGCTGGTTGCGCTGTTTTTCTTTGCACCCCCTCACC +ATCCTATGGTTGGTGTTTTTCTTGATTTCTGTGAATATGCCTTCAGGAATCTTGGCCATG +GTGTTGTTGGTTTCTCTTTGGCTTCTTGGTCGTTATACTAATGTTGCTGGCCTTGTCACC +CCCTACGACATTCATCATTACACCAGTGGCCCCCGCGGTGTTGCCGCCTTGGCTACCGCA +CCAGATGGGACCTACTTGGCCGCTGTCCGCCGCGCTGCGTTGACTGGCCGCACCATGCTG +TTTACCCCGTCCCAGCTTGGGTCTCTTCTTGAGGGTGCTTTCAGAACTCGAAAGCCCTCA +CTGAACACCGTCAATGTGATCGGGTCCTCCATGGGCTCTGGCGGGGTGTTTACCATCGAC +GGGAAAGTCAAGTGCGTAACTGCCGCACATGTCCTTACGGGCAATTCAGCTCGGGTTTCC +GGGGTCGGCTTCAATCAAATGCTTGACTTTGACGTAAAGGGAGATTTCGCTATAGCTGAT +TGCCCGAATTGGCAAGGGGCTGCCCCCAAGACCCAATTCTGCACGGATGGATGGACTGGC +CGTGCCTATTGGCTAACATCCTCTGGCGTCGAACCCGGCGTCATTGGAAAAGGATTCGCC +TTCTGCTTCACCGCATGTGGCGATTCCGGGTCCCCAGTGATCACCGAGGCCGGTGAGCTT +GTCGGCGTTCACACGGGATCGAATAAACAAGGGGGGGGCATTGTTACGCGCCCCTCAGGC +CAGTTTTGTAATGTGGCACCCATCAAGCTAAGCGAATTAAGTGAATTCTTTGCTGGGCCT +AAGGTCCCGCTCGGTGATGTGAAGGTCGGCAGCCACATAATTAAAGACATAAGCGAGGTG +CCTTCAGATCTTTGTGCCTTGCTTGCTGCCAAACCTGAACTGGAAGGAGGCCTCTCCACC +GTCCAACTTCTTTGTGTGTTTTTTCTCCTGTGGAGAATGATGGGACATGCCTGGACGCCC +TTGGTTGCTGTGAGTTTCTTTATTTTGAATGAGGTTCTCCCAGCCGTCCTGGTCCGGAGT +GTTTTCTCCTTTGGAATGTTTGTGCTATCCTGGCTCACGCCATGGTCTGCGCAAGTTCTG +ATGATCAGGCTTCTGACAGCAGCTCTTAACAGGAACAGATGGTCACTTGCCTTTTTCAGC +CTCGGTGCAGTGACCGGTTTTGTCGCAGATCTTGCGGCCACTCAGGGGCATCCGTTGCAG +GCAGTGATGAATTTGAGCACCTATGCATTCCTGCCTCGGATGATGGTTGTGACCTCACCA +GTCCCAGTGATCACGTGTGGTGTCGTGCACCTACTTGCCATCATTTTGTACTTGTTTAAG +TACCGTGGCCCGCACCATATCCTTGTTGGCGATGGAGTGTTCTCTGCGGCTTTCTTCTTG +AGATACTTTGCCGAG diff --git a/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/sequences.fasta b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/sequences.fasta new file mode 100644 index 000000000..e04b2b6e8 --- /dev/null +++ b/data/community/UdeM-LMIVV/BabyV/PRRSV2/nsp3-4-5/Baby2026/sequences.fasta @@ -0,0 +1,256 @@ +>MN046230.1 +GGAGGCCCACACCTCGCAGCTGCTCTGCATGTTGCCTGCTCGATGACCTTGCACATGCTT +GCTGGAATCTATGTGACCTCGGTGAGCACCTGCGGCACCGGCACCAATGACCCGTGGTGC +ACCAATCCGTTTGCCGTCCCTGGTTACGGACCCGGCTCTCTCTGCACGTCTAGGTTGTGC +ATCTCCCAGCATGGCCTTACACTGCCCTTGACGGCGTTGGTGGCCGGTTTCGGCATTCAG +GAAGTCGCTTTGGTTGTTTTAATCTTAATTTCCATCGGTGGCTTGGCTCACCGGTTGAGT +TGCAAGGCTGATGTGATGTTTGTTTTACTCGCAATCGCTTGCTATGTTTGGGAACCTCTC +ACCTGGTTGCTTTGTGTGTTTCCTTGCTGGCTGCGGTATTTTTCTTTGCACCCTTTCACT +ATTCTATGGTTAGTGTTTTTCTTGATCGCTGTAAACGCGCCTTCGGGGATCTTAGCCTTG +GTGTTGTTGGTCGTTCTTTGGCTCCTCGGCCGCTATACCAATGTTGCTGGTCTTGTCACC +CCCTATGACATCCACCATTACACCAATGGCCCCCGTGGTGTTGCTGCCTTGGCCACCGCA +CCGGAAGGAACCTACCTGGCCGCTGTCCGCCGCGCCGCGTTGACTGGTCGCACCATGCTG +TTCACCCCGTCTCAGCTTGGGTCCCTCCTTGAGGGTGCTTTCAGAACTCAAAAGCCCTCA +CTGAATACCGTCAATGTGGTCGGGTCCTCCATGGGCTCTGGCGGAGTGTTCAATATTGAC +GGGAAAATCAAGTGCGTGACTGCCGCACATGTCCTTACGGGTAACTCAGCTAGGGTTTCC +GGGGTCGGCTTTAATCAGATGCTTGACTTTGATGTAAAAGGGGACTTCGCCATAGCTGAT +TGCCCGAATTGGCAAGGAGTTGCTCCCAAGGCCCAGTTCTGTAAGGATGGGTGGACTGGC +CGCGCCTATTGGCTGACATCTTCTGGCGTTGAACCCGGTGTTATTGGGAATGGGTTCGCC +TTCTGCTTCACCGCGTGTGGTGATTCTGGATCCCCAGTGATTACCGAAGCCGGTGAGCTT +GTCGGCGTTCATACAGGGTCAAACAAACAAGGAGGAGGCATTGTCACGCGCCCCTCAGGC +CAGTTTTGTAATGTGAAGTCCATCAAGCTGAGCGAATTGAGTGAATTCTTCGCTGGACCC +AAGGTCCCGCTCGGTGATGTAAAACTCGGCAGTCACATAGTTAAAGACACACACGAGGTG +CCTTCAGATCTTTGTGCCCTGCTTGCTGCCAAACCTGAACTGGAAGGAGGTCTTTCCACA +GTTCAACTTCTGTGTGTGTTTTTCCTCCTGTGGAGGATGATGGGGCATGCCTGGACGCCT +TTGGTTGCTGTGGGGTTTTTCCTCCTGAATGAGATTCTCCCAGCTGTCCTGGTCCGGAGT +GCTTTCTCCTTCGGGATGTTTGTGCTGTCCTGGCTCACGCCATGGTCTGCGCAAGTCCTG +ATGATCAGGCTTCTGACAGCAGCCCTTAACAGAAACAAATTGTCTCTTGGTTTTTACAGC +CTTGGGGCAATAACCAGTTTTGTCGCAGACCTTGCGGTGACTCAAGGGCGCCCGTTACAG +GTGGTAATGAACCTGAGCACTTATGCCTTCTTGCCCCGAATGATGGTTGTGTCCTCACCA +GTCCCGGTGATCGCTTGCGGCGTCGTGCACCTCCTTGCCATAATTTTGTACTTGTTTAAG +TACCGCTGTCTTCATAATGTCCTTGTTGGCGATGGAGCATTCTCTTCGGCTTTTTTTTTG +CGATACTTTGCCGAG +>ON365556.1 +GGAGGCCCACACCTCATTGCTGCCTTGCATGTTGCTTGCTCGATGGCTCTTCACATGCTT +GCCGGGATTTATGTGACCTCGGTGAGCACCTGCGGCACTGGCACTAACGACCCGTGGTGT +ACCAATCCGTTTGCCGTCCCTGGTTACGGACCCGGCTCACTCTGCACGTCTAGGTTGTGT +ATCTCCCAGCATGGCCTCACACTACCCTTGACGGCGCTAGTGGCTGGGTTCGGTATTCAG +GAGATTGCTTTGGTTGTTTTAATCTTTGTTTCTATCGGTGGTTTGGCTCATCGGTTGAGT +TGCAAGGCTGACATGTTGTGCATCTTACTCGCAATCGCTAGTTATGTTTGGGAACCTCTC +ACTTGGTTGCTTTGTGTGTTTCCTTGTTGGCTGCGGTGTTTTCCTTTGCATCCTTTCACC +GTTCTATGGTTGGTGTTTTTCTTGATCTCTGTAAATGCGCCTTCGGGGATTTTGGCTGTG +GTGTTATTGGTTTCCCTCTGGCTTTTAGGTCGTTATACTAACATTGCTGGTCTTGTCACC +CCCTACGACATTCATCATTACACCAGCGGCCCTCGCGGCGTCGCCGCCTTGGCTACCGCA +CCAGATGGAACCTACTTGGCTGCCGTTCGCCGTGCTGCGTTGACTGGTCGTACCATGCTA +TTCACCCCGAGTCAACTCGGGTCCCTTCTTGAGGGCGCTTTCAGAACCCAAAAGCCCTCA +TTGAACACTGTCAATGTGGTTGGGTCCTCTATGGGCTCTGGCGGAGTGTTCACTATTGAC +GGGAAAATCAAGTGCGTGACTGCCGCACATGTCCTTACGGGTAACTCAGCTAGGGTTTCC +GGGGTCGGCTTTAACCAGATGCTTGACTTTGATGTAAAGGGGGACTTTGCCATAGCTGAT +TGCCCGAACTGGCAAGGGGCTGCTCCTAAGACCCAGTTTTGCAAGGATGGGTGGACTGGT +CGCGCCTACTGGCTGACATCCTCTGGCGTTGAGCCTGGCGTCATTGGAAATGGGTTCGCC +TTCTGCTTCACCGCGTGCGGCGATTCTGGATCTCCAGTGATCACTGAAGCCGGTGAGCTT +GTTGGTGTTCACACAGGATCAAACAAACAAGGAGGAGGCATTGTTACGCGCCCCTCGGGC +CAGTTTTGTAATGTGACTCCTGTCAAGCTGAGCGAGTTGAGTGAATTTTTCGCTGGACCT +AAGGTCCCGCTTGGTGACGTGAAGATTGGTAATCACATAATTAAGGATGCATGTGAGGTG +CCTTCGGACCTTTGTGCCCTGCTTGCTGCCAAACCCGAACTGGAAGGAGGCCTCTCCACA +GTTCAACTTCTGTGTGTGTTTTTCCTCCTGTGGAGAATGATGGGACATGCCTGGACACCC +CTGGTCGCTGTGGGATTTTTTATCCTGAATGAGATACTTCCAGCGGTGCTGGTCCGGAGT +GTTTTCTCCTTTGGGATGTTTGCACTATCTTGGTTCACGCCATGGTCTGCACAAGTCCTA +ATGATCAGACTTCTCACAGCATCCCTTAACAGAAACCAATTGTCTCTTGTTTTTTACAGC +CTTGGTGCAATAACCGGCTTTGTCGCAGATCTTGCGGTGACTCAAGGGAATCCGTTACAG +GTGGTAATGAACCAGAGCACTTATGCCTTCCTGCCTCGGGTGATGGTTGTGACCTCACCA +GTCCCAATGATTACGTGTGGTGTTGTGCACCTTCTTGCCATAATCTTGTACTTGTTTAAG +TACCGCTGCCTTCACCATGTTCTCGTTGGCGACGGAGTGTTCTCTGCGGCTTTCTTCTTG +CGATATTTTGCCGAG +>MN865490.1 +GGGGGTCCACACCTCATGGCGGCCTTACACGTTGCCTGCTCGATGACCTTGCACATGCTT +GTTGGGATTTATGTCACCACGGTGGGCTCTTGTGGTTCAGGCACTAACGATCCGTGGTGC +ACCAACCCGTTTGCTGTCCCTGTCTATGGACCTGGCTCTCTTTGCACGTCCAGGCTGTGC +ATTTCCCAGCATGGTCTTACCCTGCCTTTGACAGCGTTTGTGGCTGGATTTGGCATTCAG +GAAATTGCCATGGTGGTTTTAATCTTTGTTTCCATCGGGGGTATGGCTCACAGGTTGAGT +TGCAAAGCTGATGTGTTGTGTGTTCTGCTTGCGATAGCTAGCTATGTTTGGGAGCCCCTC +ACCTGGTTGCTCTGCACATTTCCTTGCTGGTTGCGCTGGTTTTCTCTGCATCCCCTTACC +ATCTTATGGCTGGTGTTTTTCTTAATCTCTATGAACATGCCTTCAGGAATTTTGGCCTTG +GTGTTGTTGATCTCTTTCTGGCTCCTTGGTCGTTACACTAATGTTGCCGGCCTTGTCACC +CCCTACGACATTCACCATTACACCAACGGCCCCCGCGGCGTTGCCGCCTTGGCCACCGCG +CCGGACGGGACCTACTTGGCCGCTGTCCGCCGCGCAGCGTTGACCGGTCGCACCATGTTG +TTTACCCCGTCTCAATTAGGATCACTCCTAGAGGGCGCCTTTAGAACTCAAAAGCCCGCA +CTGAATACTGTCAACGTGGTTGGGTCCTCCATGGGCTCCGGCGGGGTGTTCACCATTGAC +GGGAAGATCAAATGCGTGACCGCCGCACATGTTCTCACGGGCAACTCTGCCAGAGTCTCC +GGGATTGGCTTCAACAAAATGTTGGACTTCGATGTGAAAGGGGATTTTGCTATAGCAGAT +TGCCCGGATTGGCAAGGAGCCGCCCCGAGAACCCAATTTTGCACGGATGGCTGGACTGGC +CGCGCTTATTGGCTAACGTCCTCTGGTGTCGAACCTGGCGTCATTGGGGAAGGGTTCGCC +TTCTGTTTTACCGCGTGCGGCGACTCTGGTTCCCCAGTGATCACCGAGGCCGGGGAGCTT +GTCGGTGTCCACACGGGATCAAATAAACAAGGAGGAGGCATCGTCACGCGCCCTTCAGGC +CAGTTTTGTAATGTGACACCCGTCAAATTAAGTGAATTAAGTGAATTCTTCGCTGGACCC +AGGGTCCCACTCGGTGATGTGAAGGTCGGCAGCCATGTGATTAAAGATGTAAATGAGGTG +CCCTCAGATCTTTGCGCCTTGCTTGCTGCCAAACCCGAGTTGGAAGGGGGCCTCTCCACC +GTCCAACTTTTGTGCGTGTTTTTTCTCCTATGGAGAATGATGGGGCATGCCTGGACGCCC +TTGGTTGCTGTCGGGTTTTTTGTCTTGAATGAAATCCTCCCAGCAGTTTTGGTCCGGAGT +GTTTTCTCCTTTGGTATGTTTGCGCTGTCTTGGTTCACGCCGTGGTCTGCGCAAATTCTG +ATGATTAGGCTTTTAACCGCAGCTCTTAACAGGACCAAGTTGTCACTTGCTGTTTACAGT +CTTGGTGCGCTGACTGGATTTGTTGCGGAAGTTGCAACCAATCAGGGGCGGTCGTTACAC +GCGATCATGAACTTGAGCACCTATGCATTCCTGCCTCGTGCAATGGCCATGGCCTCACCA +GTCCCAATAATTGCGTGTGGTGTCGTGCACTTGCTTGCTATTGTTATGCACTTGTTCAAG +TACCGTAGCTTGCATGCCGTTCTGGTTGGCGATGGTGCGTTCTCCGCGGCTTTCTTCTTG +CGATACTTTGCGGAG +>KT257956.1 +GGAGGTCCACACCTCATGGCGGCTCTACATGTCGCTTGCTCAATGGCTTTGCACATGCTT +ATCGGAATTTATGTAACTGCGGTGGGTTCTTGCGGTTCTGGTACCAGTGATCCGTGGTGC +ACTAACCCGTTTGCCGTCCCTGTCTACGGACCTGGTTCTCTCTGCACGTCCAGGTTATGT +ATCTCCCAGCACGGCCTTACCTTGCCCTTAACAGCGCTTGTGGCAGGGTTTGGCTTTCAG +GAAATTGCCTTGGTTGTTTTAATCTTTGTCTCCATTGGGGGCATGGCCCACAGATTAAGT +TGCAAGGCTGATGTGTTGTGTGTTCTACTTGCAATTGCCAGCTATGTTTGGGTGCCTCTC +ACCTGGTTGCTCTGCGTGTTTCCTTGCTGGCTGCGCTGGTTCTCTCTGCATCCCCTCACC +ATTCTATGGCTGGTGTTTTTCTTGGTCTCTGTAAATATGCCCTCAGGAATCTTGGCCTTG +GTGTTGCTAATCTCTCTTTGGCTCCTTGGTCGCTACACCAATGTTGCCGGCCTTGTCACC +CCGTACGATATTCACCATTACACCAACGGCCCCCGCGGTGTGGCCGCCTTAGCCACTGCA +CCGGATGGGACTTACCTGGCCGCTGTCCGTCGCGCAGCGTTGACCGGTCGCACCATGCTG +TTCACCCCGTCTCAATTGGGGTCACTCCTTGAGGGTGCCTTTAGAACTCAAAAGCCCTCA +CTGAATACTGTCAATGTGGTTGGGTCCTCCATGGGCTCCGGCGGGGTGTTCACCATTGAC +GGGAAGATCAAATGTGTGACTGCCGCACATGTCCTTACGGGTAACTCTGCCAGAGTCTCC +GGGGTTGGCTTCAATCAAATGCTGGACTTCGATGTGAGAGGGGATTTTGCTATAGCCGAC +TGTCCGGATTGGCAAGGAGTCGCTCCGAAAACCCAATTCTGCAAGGATGGCTGGACAGGC +CGCGCTTATTGGCTAACGTCCTCTGGCGTTGAGCCTGGTGTCATTGGGAATGGATTCGCC +TTTTGTTTCACCGCGTGTGGCGATTCTGGTTCCCCAGTGATCACCGAGGCCGGGGAGCTT +GTTGGTGTTCATACGGGGTCAAACAAACAAGGAGGAGGCATTGTTACGCGCCCTTCAGGC +CAGTTTTGTGATGTGACGCCCACCAAACTGAGTGAATTGAGTGAATTCTTTGCCGGACCC +AGAGTTCCACTTGGTGATGTAAAGGTTGGCAACCACATAATTAAAGATACAAATGAGGTG +CCCTCAGATCTTTGCGCCTTGCTTGCTGCCAAGCCTGAATTGGAGGGGGGCCTCTCCACC +GTCCAACTTTTGTGCGTATTTTTCCTCCTATGGAGGATGATGGGACATGCCTGGACGCCC +TTAGTTGCCGTTGGCTTTTTTGTCTTGAATGAAATCCTCCCAGCAGTCTTGGTCCGGAGT +GTTTTCTCTTTTGGCATGTTCGCACTGTCTTGGTTCACGCCGTGGTCTGCACAAATTCTG +ATGATCAGGCTCCTAGCTGCAGCTCTTAACAGGAACAGGTGGTCACTTGCTTTTTATAGC +CTTGGTGCGCTGACCGGATTTGTTGCGGATCTTGCAGTTAATCAGGGGTGGTCGTTGCAC +GCGGTCATGAATTTGAGCACTTATGCATTTTTGCCTCGTGCAATGGTCACGGTTTCACCA +GTCCCGATAATTGCGTGCGGTGTTGTGCACTTGCTTGCTATCATTTTGTACTTGTTCAAG +TACCGCAGCCTGCATGCTGTCCTAGTTGGCGATGGCGCGTTCTCCGCAGCTTTCTTTTTG +CGATACTTTGCGGAA +>KP283406.1 +GGAGGTCCACACATCATGGCGGCCTTACATGTCGCTTGCTCGATGGCTTTGCACATGCTT +GTTGGGATTTATGTCACTGCGGTGGGTTCTTGCGGTTCTGGCACTAACGACCCGTGGTGC +ACTAACCCGTTTGCCGTCCCTGTCTACGGACCTGGCTCTCTTTGCACCTCCAGGTTGTGC +ATCTCCCAGCATGGCCTTACTCTGCCCTTAACAACGCTTGTGGCGGGGTTTGGCATTCAG +GAAGTTGCCCTGGTGGTTTTAATCTTTGTTTCCATCGGAGGTATGGCTCACAGATTAAGT +TGCAAGGCTGATGTACTGTGCATTCTGCTTGCGATTGCCAGCTATGTTTGGTTACCCCTC +ACCTGGTTGCTCTGTGTGTTTCCTTGCTGGTTACGTTGGTTTTCTTTGCATCCCCTCACC +GTTACATGGTTGGTGTTTTTCTTGATTTCTGTAAACATGCCCTCAGGAGTCTTGGCCTTG +GTATTGTTAATCTCTCTCTGGCTCCTTGGTCGCTATACCAATGTCGCAGGTCTTGTCACT +CCTTATGACATTCACCATTACACCAACGGCCCCCGCGGCGTCGCCGCCTTGGCCACTGCA +CCGGATGGGACCTACTTGGCTGCTGTCCGCCGCGCTGCGCTGACTGGTCGCACCATGCTG +TTTACCCCGTCCCAGCTTGGGTCACTCCTTGAGGGTGCCTTTAGAACCCAAAAGCCTACA +TTGAACACCGTCAATGTGGTCGGGTCCTCTATGGGCTCCGGCGGGGTGTTCACCATTGAC +GGGAAAACCAAGTGCGTAACAGCGGCGCATATTCTCACGGGCAACTCTGCCAGGGTCTCC +GGGATCGGCTTTAATCAAATGTTGGATTTCGATGTGAAAGGGGATTTTGCCATAGCCGAT +TGTCCGAATTGGCAAGGAGTCGCTCCCAAGTCCCAGTTTTGTGAGGATGGGTGGACGGGT +CGCGCTTATTGGCTAACATCCTCTGGCGTCGAACCCGGCGTCATTGGGAGAGGATTTGCC +TTTTGTTTCACCGCGTGCGGCGACTCCGGGTCCCCAGTGATCACCGAGGCCGGAGAACTT +GTCGGTGTCCACACGGGATCAAACAAACAAGGAGGAGGCATTGTCACGCGCCCTTCAGGC +CAGTTTTGTAATGTGACACCTACCAAACTGAGTGAATTGAGTGAATTCTTCGCTGGACCC +AAAGTCCCACTTGGCGATGTGAAGGTCGGTAACCATATAATCAAAGACACAAATGAGGTG +CCCTCAGATCTTTGTGCCTTGCTCGCTGCCAAACCCGAGTTGGAAGGGGGTCTCTCCACC +GTTCAACTTTTGTGCGTGTTTTTCCTCCTATGGAGAATGATGGGACATGCCTGGACGCCT +TTGGTTGCCGTTGGTTTTTTTGTTTTGAACGAAATCCTCCCAGCGGTTCTGGTCCGGAGT +GTCTTCTCCTTTGGAATGTTCACACTGTCTTGGTTCACACCGTGGTCTGCACAAATTCTA +ATGATCAGGCTTCTAACAGCAGCTCTTAACAGAAACAGATTGTCACTTGCCTTTTACAGC +CTTGGTGCACTAACTGGATTTGCTGCAGACCTTGCAATTAGTCAGGGGTACTCGCTGCAC +GCGACCATGAATCTTAGCACCTACGCATTCCTACCTCGTGCAATGGCCGCTACCTCACCA +GTCCCAACGATTGCGTGCGGTGTTATGCACTTGCTTGCTATTGTTTTGTACTTGTTCAAG +TACCGCAGCCTGCACACCGTTTTGGTCGGTGACGGAGCGTTTTCCGCAGCTTTCTTTTTG +CGATACTTTGCGGAG +>DQ459471.1 +GGAGGCCCACATCTCATGGCTGCCCTGCATGTTGCCTGCTCGATGGCTCTGCACATGCTT +GCTGGGATTTATGTGACTGCGGTGGGTTCTTGCGGCACCGGCACCAACGACCCGTGGTGC +GCTAACCCGTTTGCCGTCCCTGGCTACGGACCTGGCTCTCTCTGCACGTCCAGATTGTGC +ATTTCCCAACACGGCCTTACCCTGCCCTTGACAGCACTTGTGGCGGGATTCGGTATTCAA +GAAATTGCCTTGGTCGTTTTGATTTTTGTTTCCATCGGAGGCATGGCTCATAGGTTGAGC +TGTAAGGCTGACATGCTGTGTGTTTTGCTTGCAATTGCCAGCTATGTTTGGGTACCTCTT +ACCTGGTTGCTTTGTGTGTTTCCTTGCTGGTTGCGCTGTTTTTCTTTGCACCCCCTCACC +ATCCTATGGTTGGTGTTTTTCTTGATTTCTGTGAATATGCCTTCAGGAATCTTGGCCATG +GTGTTGTTGGTTTCTCTTTGGCTTCTTGGTCGTTATACTAATGTTGCTGGCCTTGTCACC +CCCTACGACATTCATCATTACACCAGTGGCCCCCGCGGTGTTGCCGCCTTGGCTACCGCA +CCAGATGGGACCTACTTGGCCGCTGTCCGCCGCGCTGCGTTGACTGGCCGCACCATGCTG +TTTACCCCGTCCCAGCTTGGGTCTCTTCTTGAGGGTGCTTTCAGAACTCGAAAGCCCTCA +CTGAACACCGTCAATGTGATCGGGTCCTCCATGGGCTCTGGCGGGGTGTTTACCATCGAC +GGGAAAGTCAAGTGCGTAACTGCCGCACATGTCCTTACGGGCAATTCAGCTCGGGTTTCC +GGGGTCGGCTTCAATCAAATGCTTGACTTTGACGTAAAGGGAGATTTCGCTATAGCTGAT +TGCCCGAATTGGCAAGGGGCTGCCCCCAAGACCCAATTCTGCACGGATGGATGGACTGGC +CGTGCCTATTGGCTAACATCCTCTGGCGTCGAACCCGGCGTCATTGGAAAAGGATTCGCC +TTCTGCTTCACCGCATGTGGCGATTCCGGGTCCCCAGTGATCACCGAGGCCGGTGAGCTT +GTCGGCGTTCACACGGGATCGAATAAACAAGGGGGGGGCATTGTTACGCGCCCCTCAGGC +CAGTTTTGTAATGTGGCACCCATCAAGCTAAGCGAATTAAGTGAATTCTTTGCTGGGCCT +AAGGTCCCGCTCGGTGATGTGAAGGTCGGCAGCCACATAATTAAAGACATAAGCGAGGTG +CCTTCAGATCTTTGTGCCTTGCTTGCTGCCAAACCTGAACTGGAAGGAGGCCTCTCCACC +GTCCAACTTCTTTGTGTGTTTTTTCTCCTGTGGAGAATGATGGGACATGCCTGGACGCCC +TTGGTTGCTGTGAGTTTCTTTATTTTGAATGAGGTTCTCCCTGCCGTCCTGGTCCGGAGT +GTTTTCTCCTTTGGAATGTTTGTGCTATCCTGGCTCACGCCATGGTCTGCGCAAGTTCTG +ATGATCAGGCTTCTGACAGCAGCTCTTAACAGGAACAGATGGTCACTTGCCTTTTTCAGC +CTCGGTGCAGTGACCGGTTTTGTCGCAGATCTTGCGGCCACTCAGGGGCATCCGTTGCAG +GCAGTGATGAATTTGAGCACCTATGCATTCCTGCCTCGGATGATGGTTGTGACCTCACCA +GTCCCAGTGATCACGTGTGGTGTCGTGCACCTACTTGCCATCATTTTGTACTTGTTTAAG +TACCGTGGCCTGCACCATATCCTTGTTGGCGATGGAGTGTTCTCTGCGGCTTTCTTCTTG +AGATACTTTGCCGAG +>MT409691.1 +GGAGGCCCACACCTCGCAGCTGCCCTGCATGTTGCTTGCTCGATGGCCCTGCACATGCTT +GCCGGAATTTATGTGACCTCGGTGGACACCTGCGGCACTGGCACCAACGATCCGTGGTGC 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