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fix doc build sphinx error
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tutorials/inverse/80_brainstorm_phantom_elekta.py

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# %%
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# Load and prepare the data
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# --------------------------
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# -------------------------
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# The data were collected with an Elekta Neuromag VectorView system
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# at 1000 Hz and low-pass filtered at 330 Hz.
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# %%
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# Epoch the data and plot evokeds
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# --------------------------------
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# -------------------------------
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#
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# We epoch the data around dipole events and apply baseline correction.
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# You can see that the burst envelope repeats at approximately 3 Hz.
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#
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# Determine peak activation using Global Field Power (GFP)
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# ---------------------------------------------------------
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# --------------------------------------------------------
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# GFP is the standard deviation across sensors at each time
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# point, providing a reference-independent measure of signal strength.
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# %%
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# Fit dipoles
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# ------------
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# -----------
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# We fit dipoles for each phantom and store them in a list.
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dip_all, residuals_all = [], []
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residuals_all.append(residual)
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# %%
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# Evaluate goodness of fit
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# -----------------------
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# ------------------------
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# The dipole object stores the goodness of fit (GOF) for each dipole.
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gof = [dip.gof[0] for dip in dip_all]
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# We can see that GOF varies between 50 % and up to 95 %.
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#
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# Compare estimated and true dipoles
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# -----------------------------------
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# ----------------------------------
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actual_pos, actual_ori = mne.dipole.get_phantom_dipoles()
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actual_amp = 200.0 # nAm
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# achieving sub-centimeter accuracy (mean position error 2.7mm).
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#
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# Visualise estimated and true dipoles
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# -------------------------------------
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# ------------------------------------
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actual_amp = np.ones(len(dip)) # fake amp, needed to create Dipole instance
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actual_gof = np.ones(len(dip)) # fake goodness-of-fit (GOF)

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