diff --git a/2023-bids-dicom.html b/2023-bids-dicom.html index 09982e56..077efcf3 100644 --- a/2023-bids-dicom.html +++ b/2023-bids-dicom.html @@ -241,7 +241,7 @@

BIDS ...

style="position:absolute; left:10%; top:0%; width:80%; opacity: 90%"/> --> - + @@ -300,8 +300,8 @@

We have two widely used standards,
which can benefit from cooperation

DICOMs in BIDS: the recommended source

- - + +
diff --git a/INDEX.md b/INDEX.md index db2d4035..fa489382 100644 --- a/INDEX.md +++ b/INDEX.md @@ -238,13 +238,13 @@ Cross-references in the per-topic lookup point at the shelved path citation (canonical citation slide). - "BIDS ..." features bullets, including "you've seen one BIDS dataset you've seen them all". - - BIDS-minder upstream-images slide - (`bids-standard.github.io/.../BIDS-minder.svg`). + - BIDS-minder slide (`pics/BIDS-minder.svg`). - DICOM ↔ BIDS chronology (1982 DICOM → 2014 BIDS). - Clunie MICCAI 2017 5-image fragments (data is in `pics/2017-Clunie-*.png`). - **"All standards are 'Bad', but some are used"** — recurring rhetorical slide. - - DICOMs in BIDS workflow (sourcedata, .json sidecars, BEP019, PR#1450). + - DICOMs in BIDS workflow (ReproIn `pics/dbic-flow.png` + + `pics/dbic-conversions.png`; sourcedata, .json sidecars, BEP019, PR#1450). ### `2023-brain-dandi-imgdatasrc.html` — short DANDI talk - Tiny deck (86 lines), title-only template; safe to ignore as source. @@ -365,7 +365,8 @@ ReproNim-containers / con/duct / ReproMan) - *Asset*: `pics/webshot-repronim-containers.png`, `pics/repronim-containers-{workflow,show,yoda-lower}.png`, `pics/webshot-con-duct.png`, `pics/screenshot-duct-*.png`, - `pics/duct-mriqc-cerebra.png`, `pics/borrowed/reproin-logo.jpg`. + `pics/duct-mriqc-cerebra.png`, `pics/borrowed/reproin-logo.jpg`, + `pics/dbic-flow.png`, `pics/dbic-conversions.png` (+ `-p1`/`-p2` crops). ### Extend / standards work / BIDS BEPs / BIDS 2.0 - `2026-nih-bids2.0.html` — **best BIDS 2.0 walkthrough**: deprecations diff --git a/pics/0000-zoom-background-qrcode.png b/pics/0000-zoom-background-qrcode.png deleted file mode 100644 index aef37079..00000000 --- a/pics/0000-zoom-background-qrcode.png +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/MD5E-s22796--9fce6bbdb87da9f9a6021c382baf82f8.png diff --git a/pics/0000-zoom-background-qrcode.png b/pics/0000-zoom-background-qrcode.png new file mode 120000 index 00000000..72aea2d7 --- /dev/null +++ b/pics/0000-zoom-background-qrcode.png @@ -0,0 +1 @@ +../.git/annex/objects/WM/pJ/MD5E-s22796--9fce6bbdb87da9f9a6021c382baf82f8.png/MD5E-s22796--9fce6bbdb87da9f9a6021c382baf82f8.png \ No newline at end of file diff --git a/pics/2016-openfmri-dataset-datalad-howto.png b/pics/2016-openfmri-dataset-datalad-howto.png deleted file mode 100644 index 1b1c16ae..00000000 --- a/pics/2016-openfmri-dataset-datalad-howto.png +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/MD5E-s745811--4385a108781c44b220c453ac8b631f61.png diff --git a/pics/2016-openfmri-dataset-datalad-howto.png b/pics/2016-openfmri-dataset-datalad-howto.png new file mode 120000 index 00000000..d2f265e4 --- /dev/null +++ b/pics/2016-openfmri-dataset-datalad-howto.png @@ -0,0 +1 @@ +../.git/annex/objects/08/M4/MD5E-s745811--4385a108781c44b220c453ac8b631f61.png/MD5E-s745811--4385a108781c44b220c453ac8b631f61.png \ No newline at end of file diff --git a/pics/2026-ca-origami-retreat-aicoding-qrcode.png b/pics/2026-ca-origami-retreat-aicoding-qrcode.png deleted file mode 100644 index 365caa5b..00000000 --- a/pics/2026-ca-origami-retreat-aicoding-qrcode.png +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/MD5E-s1156--41a7188d7848f733514076b9a04a9552.png diff --git a/pics/2026-ca-origami-retreat-aicoding-qrcode.png b/pics/2026-ca-origami-retreat-aicoding-qrcode.png new file mode 120000 index 00000000..96c658bf --- /dev/null +++ b/pics/2026-ca-origami-retreat-aicoding-qrcode.png @@ -0,0 +1 @@ +../.git/annex/objects/j6/Kg/MD5E-s1156--41a7188d7848f733514076b9a04a9552.png/MD5E-s1156--41a7188d7848f733514076b9a04a9552.png \ No newline at end of file diff --git a/pics/2026-repronim-YODA-BIDS-webinar-qrcode.png b/pics/2026-repronim-YODA-BIDS-webinar-qrcode.png deleted file mode 100644 index eaf6c772..00000000 --- a/pics/2026-repronim-YODA-BIDS-webinar-qrcode.png +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/MD5E-s860--b7d485c308479377b875439655c6ee24.png diff --git 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-/annex/objects/MD5E-s72761--54f9720cfa647f76d8c79cf732b723b8.png diff --git a/pics/con-tinuous-term-dandi-cli.png b/pics/con-tinuous-term-dandi-cli.png new file mode 120000 index 00000000..b5eb743d --- /dev/null +++ b/pics/con-tinuous-term-dandi-cli.png @@ -0,0 +1 @@ +../.git/annex/objects/w4/4q/MD5E-s72761--54f9720cfa647f76d8c79cf732b723b8.png/MD5E-s72761--54f9720cfa647f76d8c79cf732b723b8.png \ No newline at end of file diff --git a/pics/con_logo_square_with_fuzzybackground.png b/pics/con_logo_square_with_fuzzybackground.png deleted file mode 100644 index 807aea16..00000000 --- a/pics/con_logo_square_with_fuzzybackground.png +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/MD5E-s20600--f67f49ca4bac25ac758ffaa7acc1d8fb.png diff --git a/pics/con_logo_square_with_fuzzybackground.png b/pics/con_logo_square_with_fuzzybackground.png new file mode 120000 index 00000000..e4f3c4ac --- /dev/null +++ b/pics/con_logo_square_with_fuzzybackground.png @@ -0,0 +1 @@ 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