PolySTest/DESCRIPTION at main · computproteomics/PolySTest · GitHub

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Package: PolySTest
Title: PolySTest: Detection of differentially regulated features. Combined
      statistical testing for data with few replicates and missing values
Version: 1.7.3
Authors@R:
    person("Veit", "Schwämmle", , "veits@bmb.sdu.dk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9708-6722"))
Description: The complexity of high-throughput quantitative omics
             experiments often leads to low replicates numbers and
             many missing values. We implemented a new test to simultaneously
             consider missing values and quantitative changes, which we combined
             with well-performing statistical tests for high confidence
             detection of differentially regulated features. The package contains
             functions to run the test and to visualize the results.
License: GPL-2
Encoding: UTF-8
biocViews: MassSpectrometry, Proteomics, Software, DifferentialExpression
BugReports: https://github.com/computproteomics/PolySTest/issues
URL: https://github.com/computproteomics/PolySTest
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports:
    fdrtool (>= 1.2.15),
    limma (>= 3.61.3),
    matrixStats (>= 0.57.0),
    qvalue (>= 2.22.0),
    shiny (>= 1.5.0),
    SummarizedExperiment (>= 1.20.0),
    knitr (>= 1.33),
    plotly (>= 4.9.4),
    heatmaply (>= 1.1.1),
    circlize (>= 0.4.12),
    UpSetR (>= 1.4.0),
    gplots (>= 3.1.1),
    S4Vectors (>= 0.30.0),
    parallel (>= 4.1.0),
    grDevices (>= 4.1.0),
    graphics (>= 4.1.0),
    stats (>= 4.1.0),
    utils (>= 4.1.0)
Suggests:
    testthat (>= 3.0.0),
    BiocStyle
VignetteBuilder:
    knitr
Config/testthat/edition: 3
Depends:
    R (>= 4.4.0)