Add CI (#3)

Author: petebachant

.dvc/config

@@ -1,5 +1,6 @@
 [core]
     remote = calkit
+    autostage = true
 ['remote "calkit"']
     url = https://api.calkit.io/projects/calkit/example-basic/dvc
     auth = custom

.github/workflows/run.yml

@@ -0,0 +1,44 @@
+name: Run pipeline
+
+on: push
+
+permissions:
+  contents: write
+
+jobs:
+  main:
+    name: Run
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Configure Git credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+      - name: Setup Miniforge
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniforge-version: latest
+          auto-activate-base: true
+          conda-remove-defaults: true
+      - run: pip install calkit-python
+      - name: Restore DVC cache
+        id: cache-dvc-restore
+        uses: actions/cache/restore@v4
+        with:
+          path: .dvc/cache
+          key: ${{ runner.os }}-dvc-cache
+      - run: calkit config remote-auth
+        env:
+          CALKIT_DVC_TOKEN: ${{ secrets.CALKIT_DVC_TOKEN }}
+      - run: dvc pull
+      - run: calkit run
+      - run: calkit save -am "Run pipeline"
+        env:
+          CALKIT_DVC_TOKEN: ${{ secrets.CALKIT_DVC_TOKEN }}
+      - name: Save DVC cache
+        id: cache-dvc-save
+        uses: actions/cache/save@v4
+        with:
+          path: .dvc/cache
+          key: ${{ steps.cache-dvc-restore.outputs.cache-primary-key }}

calkit.yaml

@@ -5,7 +5,7 @@ description: A basic Calkit exmple project.
 git_repo_url: https://github.com/calkit/example-basic
 dependencies:
   - docker
-  - mamba
+  - conda
 questions:
   - Can we make reproducibility simple?
 datasets:

dvc.lock

@@ -60,10 +60,10 @@ stages:
       nfiles: 2
     - path: paper/paper.tex
       hash: md5
-      md5: af281fec490bfff26b5954baa2e177d6
-      size: 577
+      md5: 6455fc859c8b1838f22d5ac74223b323
+      size: 604
     outs:
     - path: paper/paper.pdf
       hash: md5
-      md5: 272ef20d54a4c536be5a92693164a735
-      size: 92833
+      md5: 6f1fec0754597ecdb78cf0e9852884ad
+      size: 92860

paper/paper.tex

@@ -35,7 +35,8 @@ \section{Section 1}
 
 \pagebreak
 \section{Section 2}
-Lorem Ipsum \\
+
+This is the second section of the paper.
 
 %--/Paper--