SimulationConfigFile.txt

[Simulation]
simulatePhase1 = True 							# Phase1 simulation. Generates a phasespace from a primary source
simulatePhase2 = True 							# Phase2 simulation. Cell with nanoparticles. Scores dose and electron phasespace to nucleus
simulatePhase3 = False 							# Phase3 simulation. TOPAS-nBio simulations of electrons in nucleus.
BeamSource = SARRP							# Name of the TOPAS radiation source: SARRP, TrueBeam, I125
HasSourcePHSP = False                            # If True, will copy the sourcePHSPFiles dir to the execution dir
NPsInMedium = False 								# Presence of NPs in medium. If "False", medium is considered water.
NPsInCell = False  								# Presence of NPs in cell cytoplasm. 
CellType = A549 								# Name of the cell model: A549, ... 
NPType = AuNP15									# Types: AGuIX, AuNP, water, AGuIXBi, ...
NPConcInMedium = 1.0 							# mg of NPs in ml of water. Determines the number of NPs to be explicitely simulated in the detailed region of the medium above the cell,
NPNumberInCell = 5000 							# Number of NPs in the cytoplasm.
NPNumberInMedium = 2000 						# number of NPs to be sampled in the detailed region of the medium above the cell. Overridden by NPConcInMedium.
sortNPPositions = False 							# If true, the positions of NPs are resampled in each job to simulate different cells.
simScriptFile = run_local_script.sh 			# specify the script from the bashscripts directory that will distribute and run the simulations.
njobs = 1 					 					# number of jobs to be executed
nhistories = 100000 								# number of histories to be simulated per job. Doesn't apply to PhaseSpace sources.
runDirectoryName = RunDir					# The name of the directory that will be created in work/ directory, where the simulations will be executed.