Update performance test results [skip ci]

Author: actions-user

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-03-24 04:16:14 UTC
-**Git Commit:** 0099d5b6a284ab47948fcb5ad319c8bcb5792059
+**Test Date:** 2026-03-24 16:06:57 UTC
+**Git Commit:** ff8613a146ddee41bdecbbeaf696257764e378d5
 **Branch:** main
-**Workflow Run:** [23472678251](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/23472678251)
+**Workflow Run:** [23499304977](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/23499304977)
 
 ## Test Overview
 
@@ -103,7 +103,7 @@ Test neuron connectivity queries ... ok
 test_08_similarity_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test NBLAST similarity queries ... ok
 test_09_neuron_input_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test neuron input/synapse queries ... ok
+Test neuron input/synapse queries ... FAIL
 test_10_expression_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test expression pattern queries ... ok
 test_11_transcriptomics_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -115,14 +115,23 @@ Test dataset and template queries ... FAIL
 test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test publication and transgene queries ... FAIL
 
+======================================================================
+FAIL: test_09_neuron_input_queries (src.test.test_query_performance.QueryPerformanceTest)
+Test neuron input/synapse queries
+----------------------------------------------------------------------
+Traceback (most recent call last):
+  File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 392, in test_09_neuron_input_queries
+    self.assertLess(duration, self.THRESHOLD_SLOW, "NeuronInputsTo exceeded threshold")
+AssertionError: 23.54541850090027 not less than 15.0 : NeuronInputsTo exceeded threshold
+
 ======================================================================
 FAIL: test_12_nblast_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test NBLAST similarity queries
 ----------------------------------------------------------------------
 Traceback (most recent call last):
   File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 535, in test_12_nblast_queries
     self.assertLess(duration, self.THRESHOLD_SLOW, "SimilarMorphologyTo exceeded threshold")
-AssertionError: 26.695521116256714 not less than 15.0 : SimilarMorphologyTo exceeded threshold
+AssertionError: 15.6345055103302 not less than 15.0 : SimilarMorphologyTo exceeded threshold
 
 ======================================================================
 FAIL: test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -131,7 +140,7 @@ Test dataset and template queries
 Traceback (most recent call last):
   File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 646, in test_13_dataset_template_queries
     self.assertLess(duration, self.THRESHOLD_MEDIUM, "DatasetImages exceeded threshold")
-AssertionError: 7.77028489112854 not less than 3.0 : DatasetImages exceeded threshold
+AssertionError: 6.705040454864502 not less than 3.0 : DatasetImages exceeded threshold
 
 ======================================================================
 FAIL: test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -140,12 +149,12 @@ Test publication and transgene queries
 Traceback (most recent call last):
   File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 745, in test_14_publication_transgene_queries
     self.assertLess(duration, self.THRESHOLD_SLOW, "TransgeneExpressionHere exceeded threshold")
-AssertionError: 26.72512459754944 not less than 15.0 : TransgeneExpressionHere exceeded threshold
+AssertionError: 34.635966539382935 not less than 15.0 : TransgeneExpressionHere exceeded threshold
 
 ----------------------------------------------------------------------
-Ran 15 tests in 297.093s
+Ran 15 tests in 262.302s
 
-FAILED (failures=3)
+FAILED (failures=4)
 VFBquery functions patched with caching support
 VFBquery: SOLR caching enabled by default (3-month TTL)
          Disable with: export VFBQUERY_CACHE_ENABLED=false
@@ -155,105 +164,105 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 5.0607s ✅
-get_term_info (individual): 1.9692s ✅
+get_term_info (mushroom body): 1.9394s ✅
+get_term_info (individual): 1.7042s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 2.0352s ✅
+NeuronsPartHere: 1.9705s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 1.9125s ✅
-NeuronsPresynapticHere: 1.7468s ✅
-NeuronsPostsynapticHere: 1.6815s ✅
-NeuronNeuronConnectivity: 1.5671s ✅
+NeuronsSynaptic: 2.0542s ✅
+NeuronsPresynapticHere: 1.4716s ✅
+NeuronsPostsynapticHere: 1.6915s ✅
+NeuronNeuronConnectivity: 1.4289s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.5328s ✅
-PartsOf: 1.4387s ✅
-SubclassesOf: 1.4515s ✅
+ComponentsOf: 1.3049s ✅
+PartsOf: 1.4626s ✅
+SubclassesOf: 1.5185s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 1.4031s ✅
-TractsNervesInnervatingHere: 1.3984s ✅
-LineageClonesIn: 1.4125s ✅
+NeuronClassesFasciculatingHere: 1.1950s ✅
+TractsNervesInnervatingHere: 1.2095s ✅
+LineageClonesIn: 1.6577s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 2.4564s ✅
-ImagesThatDevelopFrom: 1.4829s ✅
-epFrag: 1.4997s ✅
+ImagesNeurons: 2.1802s ✅
+ImagesThatDevelopFrom: 1.5020s ✅
+epFrag: 1.2587s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 1.4237s ✅
+ListAllAvailableImages: 1.1946s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.4471s ✅
-NeuronRegionConnectivityQuery: 1.4128s ✅
+NeuronNeuronConnectivityQuery: 1.2004s ✅
+NeuronRegionConnectivityQuery: 1.1920s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 0.7554s ✅
+SimilarMorphologyTo: 0.6368s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 8.9214s ✅
+NeuronInputsTo: 23.5454s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 1.0704s ✅
+ExpressionOverlapsHere: 0.9018s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 0.7066s ✅
+anatScRNAseqQuery: 1.0014s ✅
   └─ Found 57 total clusters, returned 10
-clusterExpression: 57.9391s ✅
+clusterExpression: 23.1301s ✅
   └─ Found 4588 genes expressed, returned 10
-clusterExpression: Skipped (test data may not exist): 57.939138650894165 not less than 15.0 : clusterExpression exceeded threshold
-expressionCluster: 31.7104s ✅
+clusterExpression: Skipped (test data may not exist): 23.13011360168457 not less than 15.0 : clusterExpression exceeded threshold
+expressionCluster: 32.9385s ✅
   └─ Found 9 clusters expressing gene
-expressionCluster: Skipped (test data may not exist): 31.710397720336914 not less than 15.0 : expressionCluster exceeded threshold
-scRNAdatasetData: 37.6573s ✅
+expressionCluster: Skipped (test data may not exist): 32.93846011161804 not less than 15.0 : expressionCluster exceeded threshold
+scRNAdatasetData: 17.3195s ✅
   └─ Found 13 clusters in dataset, returned 10
-scRNAdatasetData: Skipped (test data may not exist): 37.657275676727295 not less than 15.0 : scRNAdatasetData exceeded threshold
+scRNAdatasetData: Skipped (test data may not exist): 17.31954550743103 not less than 15.0 : scRNAdatasetData exceeded threshold
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 26.6955s ✅
+SimilarMorphologyTo: 15.6345s ✅
   └─ Found 215 NBLAST matches, returned 10
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 0.7183s ✅
+PaintedDomains: 0.6109s ✅
   └─ Found 46 painted domains, returned 10
-DatasetImages: 7.7703s ✅
+DatasetImages: 6.7050s ✅
   └─ Found 46 images in dataset, returned 10
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 0.7170s ✅
+TermsForPub: 0.6130s ✅
   └─ Found 2 terms for publication
-TransgeneExpressionHere: 26.7251s ✅
+TransgeneExpressionHere: 34.6360s ✅
   └─ Found 2340 transgene expressions, returned 10
 
 ================================================================================
@@ -265,7 +274,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 2.913s
+Ran 1 test in 2.437s
 
 OK
 VFBquery functions patched with caching support
@@ -275,9 +284,9 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.4277 seconds
-VFB_00101567 query took: 1.4844 seconds
-Total time for both queries: 2.9121 seconds
+FBbt_00003748 query took: 1.2333 seconds
+VFB_00101567 query took: 1.2033 seconds
+Total time for both queries: 2.4366 seconds
 Performance Level: 🟡 Good (1.5-3 seconds)
 ==================================================
 Performance test completed successfully!
@@ -296,4 +305,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-03-24 04:16:14 UTC*
+*Last updated: 2026-03-24 16:06:57 UTC*