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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-03-11 17:21:41 UTC
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**Git Commit:** 71f9a8d671e7d827ed104ffcfa286cc012c570c8
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**Test Date:** 2026-03-11 17:53:09 UTC
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**Git Commit:** 0ffde096b5942c4e034c96cd249a09f58bc21860
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**Branch:** main
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**Workflow Run:** [22965293963](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/22965293963)
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**Workflow Run:** [22966684140](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/22966684140)
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## Test Overview
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@@ -120,12 +120,12 @@ FAIL: test_13_dataset_template_queries (src.test.test_query_performance.QueryPer
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Test dataset and template queries
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----------------------------------------------------------------------
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Traceback (most recent call last):
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File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 660, in test_13_dataset_template_queries
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self.assertLess(duration, self.THRESHOLD_MEDIUM, "AllAlignedImages exceeded threshold")
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AssertionError: 3.2554502487182617 not less than 3.0 : AllAlignedImages exceeded threshold
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File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 693, in test_13_dataset_template_queries
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self.assertLess(duration, self.THRESHOLD_MEDIUM, "AllDatasets exceeded threshold")
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AssertionError: 4.088317155838013 not less than 3.0 : AllDatasets exceeded threshold
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----------------------------------------------------------------------
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Ran 15 tests in 133.810s
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Ran 15 tests in 65.254s
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FAILED (failures=1)
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.1970s
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get_term_info (individual): 2.5872s
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get_term_info (mushroom body): 1.9892s
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get_term_info (individual): 1.6199s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.4559s
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NeuronsPartHere: 1.8294s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 2.2274s
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NeuronsPresynapticHere: 2.0692s
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NeuronsPostsynapticHere: 1.8107s
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NeuronNeuronConnectivity: 1.6657s
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NeuronsSynaptic: 2.0202s
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NeuronsPresynapticHere: 1.5453s
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NeuronsPostsynapticHere: 1.6404s
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NeuronNeuronConnectivity: 1.4021s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.7232s
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PartsOf: 1.5752s
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SubclassesOf: 1.7310s
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ComponentsOf: 1.4960s
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PartsOf: 1.4963s
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SubclassesOf: 1.3872s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.8439s
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TractsNervesInnervatingHere: 1.7306s
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LineageClonesIn: 1.5758s
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NeuronClassesFasciculatingHere: 1.3866s
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TractsNervesInnervatingHere: 1.4102s
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LineageClonesIn: 1.4129s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 2.7480s
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ImagesThatDevelopFrom: 1.6533s
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epFrag: 1.5697s
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ImagesNeurons: 2.4055s
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ImagesThatDevelopFrom: 1.4404s
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epFrag: 1.4158s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.6280s
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ListAllAvailableImages: 1.3937s
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CONNECTIVITY QUERIES
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NeuronNeuronConnectivityQuery: 1.6796s
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NeuronRegionConnectivityQuery: 1.5941s
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NeuronNeuronConnectivityQuery: 1.3954s
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NeuronRegionConnectivityQuery: 1.4048s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.8204s
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SimilarMorphologyTo: 0.7456s
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NEURON INPUT QUERIES (Neo4j)
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================================================================================
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NeuronInputsTo: 3.1604s
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NeuronInputsTo: 3.1516s
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 1.1155s
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ExpressionOverlapsHere: 1.0320s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.8097s
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anatScRNAseqQuery: 0.7061s
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└─ Found 57 total clusters, returned 10
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clusterExpression: 56.5270s
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clusterExpression: 0.8428s
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└─ Found 4588 genes expressed, returned 10
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clusterExpression: Skipped (test data may not exist): 56.52697467803955 not less than 15.0 : clusterExpression exceeded threshold
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expressionCluster: 0.8523s ✅
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expressionCluster: 0.7940s ✅
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└─ Found 9 clusters expressing gene
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scRNAdatasetData: 0.8334s
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scRNAdatasetData: 0.5851s
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└─ Found 13 clusters in dataset, returned 10
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 1.0267s
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SimilarMorphologyTo: 0.8733s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.7626s
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SimilarMorphologyToPartOf: 0.5787s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.8275s
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SimilarMorphologyToPartOfexp: 0.5634s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.7719s
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SimilarMorphologyToNB: 0.5588s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 1.1848s
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SimilarMorphologyToNBexp: 0.5459s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.8075s
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PaintedDomains: 0.7055s
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└─ Found 46 painted domains, returned 10
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DatasetImages: 0.8571s
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DatasetImages: 0.7645s
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└─ Found 46 images in dataset, returned 10
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AllAlignedImages: 3.2555s
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AllAlignedImages: 2.4664s
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└─ Found 546915 aligned images, returned 10
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AlignedDatasets: 0.7066s ✅
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└─ Found 72 aligned datasets, returned 10
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AllDatasets: 4.0883s ✅
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└─ Found 128 total datasets, returned 20
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.7905s
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TermsForPub: 0.7018s
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└─ Found 2 terms for publication
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TransgeneExpressionHere: 1.6033s
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TransgeneExpressionHere: 1.4814s
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└─ Found 2350 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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@@ -257,7 +260,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 3.225s
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Ran 1 test in 2.878s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.6026 seconds
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VFB_00101567 query took: 1.6220 seconds
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Total time for both queries: 3.2247 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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FBbt_00003748 query took: 1.4339 seconds
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VFB_00101567 query took: 1.4431 seconds
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Total time for both queries: 2.8770 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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==================================================
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Performance test completed successfully!
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-03-11 17:21:41 UTC*
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*Last updated: 2026-03-11 17:53:09 UTC*

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