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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-04-13 04:55:07 UTC
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**Git Commit:** 0aa4e09af11ce032c7725ba799cb659ed37ed741
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**Test Date:** 2026-04-14 04:41:23 UTC
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**Git Commit:** 68681112d71a618afb12e279668b6524a0ae3919
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**Branch:** main
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**Workflow Run:** [24326278539](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/24326278539)
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**Workflow Run:** [24381247694](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/24381247694)
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## Test Overview
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Traceback (most recent call last):
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File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 660, in test_13_dataset_template_queries
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self.assertLess(duration, self.THRESHOLD_MEDIUM, "AllAlignedImages exceeded threshold")
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AssertionError: 3.799640417098999 not less than 3.0 : AllAlignedImages exceeded threshold
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AssertionError: 3.135908842086792 not less than 3.0 : AllAlignedImages exceeded threshold
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----------------------------------------------------------------------
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Ran 15 tests in 99.321s
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Ran 15 tests in 64.637s
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FAILED (failures=1)
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 7.6878s
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get_term_info (individual): 2.3657s
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get_term_info (mushroom body): 1.9544s
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get_term_info (individual): 1.7863s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.3641s
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NeuronsPartHere: 2.0592s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 2.2981s
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NeuronsPresynapticHere: 1.9954s
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NeuronsPostsynapticHere: 2.0811s
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NeuronNeuronConnectivity: 1.9506s
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NeuronsSynaptic: 1.8370s
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NeuronsPresynapticHere: 1.4470s
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NeuronsPostsynapticHere: 1.6371s
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NeuronNeuronConnectivity: 1.6363s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.8205s
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PartsOf: 1.8139s
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SubclassesOf: 1.7725s
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ComponentsOf: 1.4187s
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PartsOf: 1.4539s
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SubclassesOf: 1.4354s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.8023s
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TractsNervesInnervatingHere: 1.7935s
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LineageClonesIn: 1.7896s
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NeuronClassesFasciculatingHere: 1.4316s
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TractsNervesInnervatingHere: 1.4232s
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LineageClonesIn: 1.4107s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 3.0280s
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ImagesThatDevelopFrom: 1.8521s
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epFrag: 1.7808s
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ImagesNeurons: 2.4559s
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ImagesThatDevelopFrom: 1.4750s
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epFrag: 1.4563s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.7906s
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ListAllAvailableImages: 1.4424s
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================================================================================
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CONNECTIVITY QUERIES
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================================================================================
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NeuronNeuronConnectivityQuery: 1.8120s
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NeuronRegionConnectivityQuery: 1.7728s
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NeuronNeuronConnectivityQuery: 1.4302s
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NeuronRegionConnectivityQuery: 1.3991s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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SimilarMorphologyTo: 0.9593s
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SimilarMorphologyTo: 0.7458s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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NeuronInputsTo: 5.2450s
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NeuronInputsTo: 3.0526s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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================================================================================
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ExpressionOverlapsHere: 1.2711s
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ExpressionOverlapsHere: 1.0612s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.9148s
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anatScRNAseqQuery: 0.7343s
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└─ Found 57 total clusters, returned 10
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clusterExpression: 5.6068s
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clusterExpression: 4.0487s
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└─ Found 4588 genes expressed, returned 10
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expressionCluster: 1.0689s
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expressionCluster: 0.7618s
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└─ Found 9 clusters expressing gene
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scRNAdatasetData: 1.1588s
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scRNAdatasetData: 0.6975s
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└─ Found 13 clusters in dataset, returned 10
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 1.1973s
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SimilarMorphologyTo: 1.2201s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.7818s
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SimilarMorphologyToPartOf: 0.6754s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.7275s
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SimilarMorphologyToPartOfexp: 0.5932s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.8871s
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SimilarMorphologyToNB: 0.5935s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.7260s
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SimilarMorphologyToNBexp: 0.5874s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.9338s
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PaintedDomains: 0.7017s
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└─ Found 46 painted domains, returned 10
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DatasetImages: 0.9118s
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DatasetImages: 0.5875s
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└─ Found 46 images in dataset, returned 10
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AllAlignedImages: 3.7996s
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AllAlignedImages: 3.1359s
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└─ Found 527179 aligned images, returned 10
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 1.0560s
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TermsForPub: 0.7111s
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└─ Found 2 terms for publication
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TransgeneExpressionHere: 2.4009s
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TransgeneExpressionHere: 1.4707s
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└─ Found 2340 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 3.631s
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Ran 1 test in 2.894s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.8020 seconds
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VFB_00101567 query took: 1.8291 seconds
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Total time for both queries: 3.6311 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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FBbt_00003748 query took: 1.4503 seconds
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VFB_00101567 query took: 1.4430 seconds
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Total time for both queries: 2.8933 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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==================================================
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Performance test completed successfully!
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-04-13 04:55:07 UTC*
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*Last updated: 2026-04-14 04:41:23 UTC*

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