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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-03-11 22:59:04 UTC
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**Git Commit:** 9f1b6e4d3eab4f05ec42cddaa7c6023c5a365537
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**Test Date:** 2026-03-11 23:33:08 UTC
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**Git Commit:** c4a635551f511405618ef8d83d4787a3b365cba6
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**Branch:** main
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**Workflow Run:** [22978372229](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/22978372229)
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**Workflow Run:** [22979374165](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/22979374165)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 59.295s
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Ran 15 tests in 60.396s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.0081s
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get_term_info (individual): 1.7397s
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get_term_info (mushroom body): 2.2268s
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get_term_info (individual): 2.1663s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.5824s
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NeuronsPartHere: 2.4951s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 2.1108s
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NeuronsPresynapticHere: 1.3462s
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NeuronsPostsynapticHere: 2.2188s
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NeuronNeuronConnectivity: 1.6775s
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NeuronsSynaptic: 2.3563s
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NeuronsPresynapticHere: 1.6107s
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NeuronsPostsynapticHere: 1.4484s
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NeuronNeuronConnectivity: 1.5664s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.8210s
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PartsOf: 1.2487s
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SubclassesOf: 1.3092s
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ComponentsOf: 1.3345s
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PartsOf: 1.4665s
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SubclassesOf: 1.2394s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.3113s
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TractsNervesInnervatingHere: 1.2992s
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LineageClonesIn: 1.2208s
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NeuronClassesFasciculatingHere: 1.3063s
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TractsNervesInnervatingHere: 1.3089s
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LineageClonesIn: 1.2540s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 2.1865s
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ImagesThatDevelopFrom: 1.2811s
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epFrag: 1.2120s
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ImagesNeurons: 2.4516s
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ImagesThatDevelopFrom: 1.2706s
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epFrag: 1.2261s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.2271s
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ListAllAvailableImages: 1.2445s
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================================================================================
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CONNECTIVITY QUERIES
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================================================================================
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NeuronNeuronConnectivityQuery: 1.2293s
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NeuronRegionConnectivityQuery: 1.2293s
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NeuronNeuronConnectivityQuery: 1.2551s
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NeuronRegionConnectivityQuery: 1.2254s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.7260s
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SimilarMorphologyTo: 0.7235s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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================================================================================
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NeuronInputsTo: 2.8684s
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NeuronInputsTo: 2.8623s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 0.9432s
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ExpressionOverlapsHere: 0.9526s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.6234s
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anatScRNAseqQuery: 0.6216s
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└─ Found 57 total clusters, returned 10
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clusterExpression: 0.7759s
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clusterExpression: 0.8405s
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└─ Found 4588 genes expressed, returned 10
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expressionCluster: 0.6320s
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expressionCluster: 0.5978s
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└─ Found 9 clusters expressing gene
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scRNAdatasetData: 0.5679s
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scRNAdatasetData: 0.8520s
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└─ Found 13 clusters in dataset, returned 10
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 0.8021s
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SimilarMorphologyTo: 1.1044s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.6587s
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SimilarMorphologyToPartOf: 0.5773s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.6786s
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SimilarMorphologyToPartOfexp: 0.5799s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.5970s
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SimilarMorphologyToNB: 0.5973s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.5841s
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SimilarMorphologyToNBexp: 0.5953s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.6015s
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PaintedDomains: 0.6268s
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└─ Found 46 painted domains, returned 10
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DatasetImages: 0.5756s
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DatasetImages: 0.5434s
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└─ Found 46 images in dataset, returned 10
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AllAlignedImages: 2.6164s
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AllAlignedImages: 2.6446s
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└─ Found 546915 aligned images, returned 10
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AlignedDatasets: 0.6061s
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AlignedDatasets: 0.6185s
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└─ Found 72 aligned datasets, returned 10
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AllDatasets: 0.8879s
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AllDatasets: 0.7071s
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└─ Found 128 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.6129s
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TermsForPub: 0.6282s
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└─ Found 2 terms for publication
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TransgeneExpressionHere: 1.2550s
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TransgeneExpressionHere: 1.2814s
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└─ Found 2350 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Traceback (most recent call last):
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File "/home/runner/work/VFBquery/VFBquery/src/test/term_info_queries_test.py", line 590, in test_term_info_performance
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self.assertLess(duration_1, max_single_query_time,
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AssertionError: 16.698346376419067 not less than 10.0 : FBbt_00003748 query took 16.6983s, exceeding 10.0s threshold
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AssertionError: 16.701056241989136 not less than 10.0 : FBbt_00003748 query took 16.7011s, exceeding 10.0s threshold
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----------------------------------------------------------------------
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Ran 1 test in 17.964s
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Ran 1 test in 17.954s
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FAILED (failures=1)
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 16.6983 seconds
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VFB_00101567 query took: 1.2652 seconds
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Total time for both queries: 17.9636 seconds
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FBbt_00003748 query took: 16.7011 seconds
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VFB_00101567 query took: 1.2522 seconds
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Total time for both queries: 17.9533 seconds
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Performance Level: 🔴 Slow (> 6 seconds)
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==================================================
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-03-11 22:59:04 UTC*
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*Last updated: 2026-03-11 23:33:08 UTC*

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