Update performance test results [skip ci]

Author: actions-user

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-03-24 16:06:57 UTC
-**Git Commit:** ff8613a146ddee41bdecbbeaf696257764e378d5
+**Test Date:** 2026-03-24 16:19:48 UTC
+**Git Commit:** 8a20c02b29c556bd71a63e3158a3b6aa4053b47e
 **Branch:** main
-**Workflow Run:** [23499304977](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/23499304977)
+**Workflow Run:** [23499858740](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/23499858740)
 
 ## Test Overview
 
@@ -113,7 +113,7 @@ Test NBLAST similarity queries ... FAIL
 test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test dataset and template queries ... FAIL
 test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test publication and transgene queries ... FAIL
+Test publication and transgene queries ... ok
 
 ======================================================================
 FAIL: test_09_neuron_input_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -122,7 +122,7 @@ Test neuron input/synapse queries
 Traceback (most recent call last):
   File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 392, in test_09_neuron_input_queries
     self.assertLess(duration, self.THRESHOLD_SLOW, "NeuronInputsTo exceeded threshold")
-AssertionError: 23.54541850090027 not less than 15.0 : NeuronInputsTo exceeded threshold
+AssertionError: 30.493608236312866 not less than 15.0 : NeuronInputsTo exceeded threshold
 
 ======================================================================
 FAIL: test_12_nblast_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -131,7 +131,7 @@ Test NBLAST similarity queries
 Traceback (most recent call last):
   File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 535, in test_12_nblast_queries
     self.assertLess(duration, self.THRESHOLD_SLOW, "SimilarMorphologyTo exceeded threshold")
-AssertionError: 15.6345055103302 not less than 15.0 : SimilarMorphologyTo exceeded threshold
+AssertionError: 24.50617504119873 not less than 15.0 : SimilarMorphologyTo exceeded threshold
 
 ======================================================================
 FAIL: test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -140,21 +140,12 @@ Test dataset and template queries
 Traceback (most recent call last):
   File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 646, in test_13_dataset_template_queries
     self.assertLess(duration, self.THRESHOLD_MEDIUM, "DatasetImages exceeded threshold")
-AssertionError: 6.705040454864502 not less than 3.0 : DatasetImages exceeded threshold
-
-======================================================================
-FAIL: test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test publication and transgene queries
-----------------------------------------------------------------------
-Traceback (most recent call last):
-  File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 745, in test_14_publication_transgene_queries
-    self.assertLess(duration, self.THRESHOLD_SLOW, "TransgeneExpressionHere exceeded threshold")
-AssertionError: 34.635966539382935 not less than 15.0 : TransgeneExpressionHere exceeded threshold
+AssertionError: 34.84825253486633 not less than 3.0 : DatasetImages exceeded threshold
 
 ----------------------------------------------------------------------
-Ran 15 tests in 262.302s
+Ran 15 tests in 329.480s
 
-FAILED (failures=4)
+FAILED (failures=3)
 VFBquery functions patched with caching support
 VFBquery: SOLR caching enabled by default (3-month TTL)
          Disable with: export VFBQUERY_CACHE_ENABLED=false
@@ -164,106 +155,106 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 1.9394s ✅
-get_term_info (individual): 1.7042s ✅
+get_term_info (mushroom body): 2.3996s ✅
+get_term_info (individual): 2.5313s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 1.9705s ✅
+NeuronsPartHere: 2.4937s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 2.0542s ✅
-NeuronsPresynapticHere: 1.4716s ✅
-NeuronsPostsynapticHere: 1.6915s ✅
-NeuronNeuronConnectivity: 1.4289s ✅
+NeuronsSynaptic: 2.4376s ✅
+NeuronsPresynapticHere: 1.9300s ✅
+NeuronsPostsynapticHere: 2.3862s ✅
+NeuronNeuronConnectivity: 1.9253s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.3049s ✅
-PartsOf: 1.4626s ✅
-SubclassesOf: 1.5185s ✅
+ComponentsOf: 2.0490s ✅
+PartsOf: 1.8950s ✅
+SubclassesOf: 1.8778s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 1.1950s ✅
-TractsNervesInnervatingHere: 1.2095s ✅
-LineageClonesIn: 1.6577s ✅
+NeuronClassesFasciculatingHere: 1.9436s ✅
+TractsNervesInnervatingHere: 1.8830s ✅
+LineageClonesIn: 1.9150s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 2.1802s ✅
-ImagesThatDevelopFrom: 1.5020s ✅
-epFrag: 1.2587s ✅
+ImagesNeurons: 3.2724s ✅
+ImagesThatDevelopFrom: 1.9512s ✅
+epFrag: 1.9347s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 1.1946s ✅
+ListAllAvailableImages: 1.9419s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.2004s ✅
-NeuronRegionConnectivityQuery: 1.1920s ✅
+NeuronNeuronConnectivityQuery: 1.9311s ✅
+NeuronRegionConnectivityQuery: 1.8840s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 0.6368s ✅
+SimilarMorphologyTo: 1.0131s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 23.5454s ✅
+NeuronInputsTo: 30.4936s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 0.9018s ✅
+ExpressionOverlapsHere: 1.3488s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 1.0014s ✅
+anatScRNAseqQuery: 0.9582s ✅
   └─ Found 57 total clusters, returned 10
-clusterExpression: 23.1301s ✅
+clusterExpression: 1.0859s ✅
   └─ Found 4588 genes expressed, returned 10
-clusterExpression: Skipped (test data may not exist): 23.13011360168457 not less than 15.0 : clusterExpression exceeded threshold
-expressionCluster: 32.9385s ✅
+expressionCluster: 43.9328s ✅
   └─ Found 9 clusters expressing gene
-expressionCluster: Skipped (test data may not exist): 32.93846011161804 not less than 15.0 : expressionCluster exceeded threshold
-scRNAdatasetData: 17.3195s ✅
+expressionCluster: Skipped (test data may not exist): 43.93275332450867 not less than 15.0 : expressionCluster exceeded threshold
+scRNAdatasetData: 61.6329s ✅
   └─ Found 13 clusters in dataset, returned 10
-scRNAdatasetData: Skipped (test data may not exist): 17.31954550743103 not less than 15.0 : scRNAdatasetData exceeded threshold
+scRNAdatasetData: Skipped (test data may not exist): 61.6328980922699 not less than 15.0 : scRNAdatasetData exceeded threshold
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 15.6345s ✅
+SimilarMorphologyTo: 24.5062s ✅
   └─ Found 215 NBLAST matches, returned 10
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 0.6109s ✅
+PaintedDomains: 0.9570s ✅
   └─ Found 46 painted domains, returned 10
-DatasetImages: 6.7050s ✅
+DatasetImages: 34.8483s ✅
   └─ Found 46 images in dataset, returned 10
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 0.6130s ✅
+TermsForPub: 1.0850s ✅
   └─ Found 2 terms for publication
-TransgeneExpressionHere: 34.6360s ✅
+TransgeneExpressionHere: 10.3552s ✅
   └─ Found 2340 transgene expressions, returned 10
+✅ All publication/transgene queries completed
 
 ================================================================================
 PERFORMANCE TEST SUMMARY
@@ -274,7 +265,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 2.437s
+Ran 1 test in 4.418s
 
 OK
 VFBquery functions patched with caching support
@@ -284,10 +275,10 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.2333 seconds
-VFB_00101567 query took: 1.2033 seconds
-Total time for both queries: 2.4366 seconds
-Performance Level: 🟡 Good (1.5-3 seconds)
+FBbt_00003748 query took: 2.3444 seconds
+VFB_00101567 query took: 2.0731 seconds
+Total time for both queries: 4.4175 seconds
+Performance Level: 🟠 Acceptable (3-6 seconds)
 ==================================================
 Performance test completed successfully!
 ```
@@ -305,4 +296,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-03-24 16:06:57 UTC*
+*Last updated: 2026-03-24 16:19:48 UTC*