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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-03-22 04:14:15 UTC
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**Git Commit:** 1aaea5aaeab80558339a1055cdbf8f612849ba62
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**Test Date:** 2026-03-23 04:22:43 UTC
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**Git Commit:** 91009c3d552cac3e7699d69b829d44c06b67d6b2
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**Branch:** main
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**Workflow Run:** [23395417656](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/23395417656)
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**Workflow Run:** [23421308397](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/23421308397)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 101.727s
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Ran 15 tests in 63.515s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.3032s
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get_term_info (individual): 2.3370s
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get_term_info (mushroom body): 1.9706s
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get_term_info (individual): 1.7976s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.1638s
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NeuronsPartHere: 2.0756s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 2.5961s
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NeuronsPresynapticHere: 1.8715s
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NeuronsPostsynapticHere: 1.9219s
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NeuronNeuronConnectivity: 1.6227s
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NeuronsSynaptic: 1.9558s
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NeuronsPresynapticHere: 1.4027s
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NeuronsPostsynapticHere: 1.8855s
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NeuronNeuronConnectivity: 1.2796s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.6735s
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PartsOf: 1.5699s
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SubclassesOf: 2.0585s
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ComponentsOf: 1.7084s
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PartsOf: 1.5158s
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SubclassesOf: 1.5175s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.6752s
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TractsNervesInnervatingHere: 1.6530s
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LineageClonesIn: 1.5448s
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NeuronClassesFasciculatingHere: 1.3647s
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TractsNervesInnervatingHere: 1.2109s
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LineageClonesIn: 1.4375s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 2.6559s
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ImagesThatDevelopFrom: 1.5848s
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epFrag: 1.5204s
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ImagesNeurons: 2.1544s
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ImagesThatDevelopFrom: 1.2379s
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epFrag: 1.6778s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.5925s
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ListAllAvailableImages: 1.1886s
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================================================================================
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CONNECTIVITY QUERIES
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================================================================================
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NeuronNeuronConnectivityQuery: 1.6326s
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NeuronRegionConnectivityQuery: 1.5501s
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NeuronNeuronConnectivityQuery: 1.1997s
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NeuronRegionConnectivityQuery: 1.1907s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.9133s
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SimilarMorphologyTo: 0.6607s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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================================================================================
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NeuronInputsTo: 3.5821s
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NeuronInputsTo: 3.5261s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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================================================================================
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ExpressionOverlapsHere: 1.1945s
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ExpressionOverlapsHere: 0.9017s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.7774s
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anatScRNAseqQuery: 0.6272s
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└─ Found 57 total clusters, returned 10
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clusterExpression: 31.1174s
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clusterExpression: 3.4564s
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└─ Found 4588 genes expressed, returned 10
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clusterExpression: Skipped (test data may not exist): 31.117404460906982 not less than 15.0 : clusterExpression exceeded threshold
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expressionCluster: 0.7688s ✅
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expressionCluster: 0.7283s ✅
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└─ Found 9 clusters expressing gene
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scRNAdatasetData: 0.8556s
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scRNAdatasetData: 0.6192s
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└─ Found 13 clusters in dataset, returned 10
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 1.1326s
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SimilarMorphologyTo: 0.8103s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.6979s
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SimilarMorphologyToPartOf: 0.6934s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.7033s
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SimilarMorphologyToPartOfexp: 0.5668s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.6982s
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SimilarMorphologyToNB: 0.7522s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.7121s
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SimilarMorphologyToNBexp: 0.5673s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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================================================================================
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PaintedDomains: 0.7864s
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PaintedDomains: 0.5917s
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└─ Found 46 painted domains, returned 10
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DatasetImages: 0.7889s
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DatasetImages: 0.6075s
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└─ Found 46 images in dataset, returned 10
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AllAlignedImages: 2.8778s
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AllAlignedImages: 2.8524s
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└─ Found 465165 aligned images, returned 10
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AlignedDatasets: 0.7551s
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AlignedDatasets: 0.6080s
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└─ Found 72 aligned datasets, returned 10
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AllDatasets: 1.1123s
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AllDatasets: 0.9871s
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└─ Found 130 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.7707s
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TermsForPub: 0.5897s
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└─ Found 2 terms for publication
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TransgeneExpressionHere: 1.8640s
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TransgeneExpressionHere: 1.4857s
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└─ Found 2338 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 3.127s
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Ran 1 test in 2.445s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.5685 seconds
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VFB_00101567 query took: 1.5586 seconds
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Total time for both queries: 3.1271 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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FBbt_00003748 query took: 1.2413 seconds
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VFB_00101567 query took: 1.2033 seconds
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Total time for both queries: 2.4445 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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==================================================
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Performance test completed successfully!
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-03-22 04:14:15 UTC*
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*Last updated: 2026-03-23 04:22:43 UTC*

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