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params/charmm19.prm
@@ -37,6 +37,10 @@ Minimizations and Dynamics of Nucleic Acids", J. Comput. Chem., 7,
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E. Neria, S. Fischer and M. Karplus, "Simulation of Activation Free
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Energies in Molecular Systems", J. Chem. Phys., 105, 1902-1921 (1996)
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+Note authentic CHARMM19 excludes 1-4 VDW interactions in 6-membered
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+rings of PHE, TYR and TRP residues; these interactions are included
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+by Tinker and result in some lengthening of the ring bonds
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+
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