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Updated tests
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Lines changed: 21047 additions & 21058 deletions

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‎InvalidFiles/sbol-10608.xml‎

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@@ -32,15 +32,14 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
35-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
43-
<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
42+
<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -56,7 +55,6 @@
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<sbol:displayId>md_measure</sbol:displayId>
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<om:hasNumericalValue>11.28</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000175"/>
59-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
@@ -75,5 +73,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
76+
<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-11707.xml‎

Lines changed: 3 additions & 4 deletions
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@@ -13,7 +13,6 @@
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<sbol:displayId>fc_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000021"/>
16-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
@@ -31,15 +30,14 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
34-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
37-
<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
35+
<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
42-
<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
40+
<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -75,5 +73,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-12008.xml‎

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@@ -17,7 +17,6 @@
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<sbol:displayId>fc_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000021"/>
20-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
@@ -35,10 +34,9 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
@@ -53,7 +51,7 @@
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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</sbol:measure>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -69,7 +67,6 @@
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<sbol:displayId>md_measure</sbol:displayId>
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<om:hasNumericalValue>11.28</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000175"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
@@ -80,5 +77,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-13501.xml‎

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@@ -10,6 +10,8 @@
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<sbol:measure>
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<om:Measure rdf:about="http://www.async.ece.utah.edu/md/fc/fc_measure">
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<!-- sbol:role is not allowed here! -->
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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</om:Measure>
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</sbol:measure>
@@ -28,15 +30,14 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -52,7 +53,6 @@
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<sbol:displayId>md_measure</sbol:displayId>
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<om:hasNumericalValue>11.28</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000175"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
@@ -71,5 +71,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-13502.xml‎

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Original file line numberDiff line numberDiff line change
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<sbol:displayId>fc_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000021"/>
16-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
@@ -31,15 +30,14 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
34-
<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -56,7 +54,6 @@
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<om:hasNumericalValue>ACGT</om:hasNumericalValue>
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<!-- om:hasNumericalValue is a String instead of float/double -->
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000175"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
@@ -75,5 +72,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-13503.xml‎

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<sbol:displayId>fc_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000021"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -55,7 +53,6 @@
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<sbol:displayId>md_measure</sbol:displayId>
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<om:hasNumericalValue>11.28</om:hasNumericalValue>
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<!-- om:Unit is missing -->
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-13504.xml‎

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<sbol:displayId>fc_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000021"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
@@ -31,15 +30,14 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -56,7 +54,7 @@
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<om:hasNumericalValue>11.28</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000175"/>
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<!-- type is an optional list of URIs and not a string -->
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<sbol:type rdf:resource="SBO:0000000"/>
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<sbol:type>SBO:0000000</sbol:type>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
@@ -75,5 +73,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</rdf:RDF>

‎InvalidFiles/sbol-13505.xml‎

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<sbol:displayId>fc_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000021"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
@@ -31,15 +30,14 @@
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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<sbol:type rdf:resource=""/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:type rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000177"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:role rdf:resource="http://purl.obolibrary.org/obo/NCIT_C154897"/>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
@@ -77,5 +75,6 @@
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</rdf:RDF>

‎SBOL2/ActivityTypeOutput.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#">
2+
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/">
33
<prov:Activity rdf:about="http://www.partsregistry.org/act/activityId">
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<sbol:persistentIdentity rdf:resource="http://www.partsregistry.org/act/activityId"/>
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<sbol:displayId>activityId</sbol:displayId>

‎SBOL2/AnnotationOutput.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:pr="http://partsregistry.org/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#">
2+
<rdf:RDF xmlns:pr="http://partsregistry.org/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/">
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/BBa_J23119">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/BBa_J23119"/>
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<sbol:displayId>BBa_J23119</sbol:displayId>

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