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2 parents 63ce19b + 148e97a commit ce19b93

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Lines changed: 22045 additions & 21076 deletions

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‎InvalidFiles/manifest‎

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@@ -58,12 +58,16 @@ sbol-10604.xml
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sbol-10710.xml
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sbol-10711.xml
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sbol-10712.xml
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sbol-11707.xml
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sbol-11908.xml
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sbol-13505.xml

‎InvalidFiles/sbol-10608.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/">
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<sbol:ModuleDefinition rdf:about="http://www.async.ece.utah.edu/md">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md"/>
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<sbol:displayId>md</sbol:displayId>
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<sbol:functionalComponent>
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<sbol:FunctionalComponent rdf:about="http://www.async.ece.utah.edu/md/fc">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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<sbol:displayId>fc</sbol:displayId>
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<sbol:measure>
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<!-- put anything other than om:Measure here -->
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<sbol:Sequence rdf:about="https://synbiohub.org/public/igem/BBa_I13603_sequence/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.org/public/igem/BBa_I13603_sequence"/>
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<sbol:displayId>BBa_I13603_sequence</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbol:elements>aattgtgagcggataacaattgacattgtgagcggataacaagatactgagcacatactagagaaagaggagaaatactagatggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggacggcgacgtgaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctacggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccaccctcgtgaccaccctgacctggggcgtgcagtgcttcagccgctaccccgaccacatgaagcagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttcttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctggtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcacaagctggagtacaactacatcagccacaacgtctatatcaccgccgacaagcagaagaacggcatcaaggccaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgccgaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccactacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtcctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagaggcctgctgcaaacgacgaaaactacgctttagtagcttaataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:direction rdf:resource="http://sbols.org/v2#inout"/>
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</sbol:FunctionalComponent>
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</sbol:functionalComponent>
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<sbol:interaction>
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<sbol:Interaction rdf:about="http://www.async.ece.utah.edu/md/i">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i"/>
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<sbol:displayId>i</sbol:displayId>
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<sbol:measure>
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<om:Measure rdf:about="http://www.async.ece.utah.edu/md/i/i_measure">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/i_measure"/>
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<sbol:displayId>i_measure</sbol:displayId>
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<om:hasNumericalValue>0.04</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000077"/>
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</om:Measure>
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</sbol:measure>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/NCIT_C64382"/>
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<sbol:participation>
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<sbol:Participation rdf:about="http://www.async.ece.utah.edu/md/i/p">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/i/p"/>
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<sbol:displayId>p</sbol:displayId>
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<sbol:role rdf:resource="http://identifiers.org/biomodels.sbo/SBO:0000011"/>
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<sbol:participant rdf:resource="http://www.async.ece.utah.edu/md/fc"/>
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</sbol:Participation>
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</sbol:participation>
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</sbol:Interaction>
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</sbol:interaction>
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<sbol:module>
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<sbol:Module rdf:about="http://www.async.ece.utah.edu/md/m">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/m"/>
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<sbol:displayId>m</sbol:displayId>
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<sbol:measure>
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<om:Measure rdf:about="http://www.async.ece.utah.edu/md/m/md_measure">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/md/m/md_measure"/>
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<sbol:displayId>md_measure</sbol:displayId>
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<om:hasNumericalValue>11.28</om:hasNumericalValue>
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<om:hasUnit rdf:resource="http://purl.obolibrary.org/obo/UO_0000175"/>
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</om:Measure>
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</sbol:measure>
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<sbol:definition rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
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</sbol:Module>
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</sbol:module>
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</sbol:ModuleDefinition>
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<sbol:ModuleDefinition rdf:about="http://www.async.ece.utah.edu/empty_md">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/empty_md"/>
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<sbol:displayId>empty_md</sbol:displayId>
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</sbol:ModuleDefinition>
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<sbol:ModuleDefinition rdf:about="http://www.async.ece.utah.edu/empty_md2">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/empty_md2"/>
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<sbol:displayId>empty_md2</sbol:displayId>
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</sbol:ModuleDefinition>
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<sbol:ComponentDefinition rdf:about="http://www.async.ece.utah.edu/cd">
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<sbol:persistentIdentity rdf:resource="http://www.async.ece.utah.edu/cd"/>
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<sbol:displayId>cd</sbol:displayId>
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<sbol:type rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17634"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#SmallMolecule"/>
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</sbol:ComponentDefinition>
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</rdf:RDF>

‎InvalidFiles/sbol-10710.xml‎

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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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<sbol:displayId>seq_comp</sbol:displayId>
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<sbol:elements>acagctagctacagctagct</sbol:elements>
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<sbol:elements>ttgacagctagttgacagctag</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq3.html"/>
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</sbol:Sequence>
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</rdf:RDF>

‎InvalidFiles/sbol-10711.xml‎

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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base2/seq_base2a">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2a"/>
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<sbol:displayId>seq_base2a</sbol:displayId>
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<sbol:start>1</sbol:start>
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<sbol:end>5</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base2/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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<sbol:displayId>seq_comp</sbol:displayId>
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<sbol:elements>acagctagctacagctagct</sbol:elements>
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<sbol:elements>ttgacagctagttgacagctag</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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</rdf:RDF>

‎InvalidFiles/sbol-10712.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:pr="http://partsregistry.org/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#">
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:displayId>cd_base_2</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:displayId>cd_base_1</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp"/>
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<sbol:displayId>cd_comp</sbol:displayId>
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:start>4</sbol:start>
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<sbol:end>14</sbol:end>
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<sbol:end>13</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2"/>
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<sbol:displayId>base_s2</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s2/base_c2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2/base_c2"/>
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<sbol:displayId>base_c2</sbol:displayId>
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<sbol:start>12</sbol:start>
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<sbol:end>25</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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<sbol:component rdf:resource="http://partsregistry.org/cd/cd_comp/base1"/>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2"/>
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<sbol:displayId>base_s2</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s2/base_c2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2/base_c2"/>
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<sbol:displayId>base_c2</sbol:displayId>
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<sbol:start>12</sbol:start>
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<sbol:end>22</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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<sbol:component rdf:resource="http://partsregistry.org/cd/cd_comp/base2"/>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:ComponentDefinition>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagttagcgc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:displayId>cd_base_1</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:displayId>cd_base_2</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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</sbol:ComponentDefinition>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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<sbol:displayId>seq_base1</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagttagcgc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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<sbol:displayId>seq_comp</sbol:displayId>
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<sbol:elements>acagctagctacagctagctgcc</sbol:elements>
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<sbol:elements>acagctagctcacagctagctc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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</rdf:RDF>

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