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xwm1990
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added tests for scr to loc
1 parent adaf14d commit 7e05f73

3 files changed

Lines changed: 328 additions & 0 deletions

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‎InvalidFiles/sbol-10710.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:pr="http://partsregistry.org/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#">
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:displayId>cd_base_2</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:displayId>cd_base_1</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp"/>
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<sbol:displayId>cd_comp</sbol:displayId>
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<dcterms:title>cd_comp</dcterms:title>
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<dcterms:description>Constitutive promoter</dcterms:description>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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<sbol:component>
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<sbol:Component rdf:about="http://partsregistry.org/cd/cd_comp/base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2"/>
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<sbol:displayId>base2</sbol:displayId>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base2/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:start>4</sbol:start>
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<sbol:end>14</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="http://partsregistry.org/cd/cd_comp/base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base1"/>
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<sbol:displayId>base1</sbol:displayId>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:sourceLocation>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_test">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_test"/>
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<sbol:displayId>seq_test</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagttagcgc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq2.html"/>
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</sbol:Sequence>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2"/>
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<sbol:displayId>base_s2</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s2/base_c2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2/base_c2"/>
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<sbol:displayId>base_c2</sbol:displayId>
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<sbol:start>12</sbol:start>
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<sbol:end>22</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1"/>
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<sbol:displayId>base_s1</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s1/base_c1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1/base_c1"/>
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<sbol:displayId>base_c1</sbol:displayId>
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<sbol:start>1</sbol:start>
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<sbol:end>11</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:ComponentDefinition>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagttagcgc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq2.html"/>
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</sbol:Sequence>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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<sbol:displayId>seq_base1</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq1.html"/>
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</sbol:Sequence>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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<sbol:displayId>seq_comp</sbol:displayId>
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<sbol:elements>acagctagctacagctagct</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq3.html"/>
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</sbol:Sequence>
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</rdf:RDF>

‎InvalidFiles/sbol-10711.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:pr="http://partsregistry.org/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#">
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:displayId>cd_base_2</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:displayId>cd_base_1</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp"/>
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<sbol:displayId>cd_comp</sbol:displayId>
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<dcterms:title>cd_comp</dcterms:title>
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<dcterms:description>Constitutive promoter</dcterms:description>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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<sbol:component>
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<sbol:Component rdf:about="http://partsregistry.org/cd/cd_comp/base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2"/>
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<sbol:displayId>base2</sbol:displayId>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base2/seq_base2a">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:displayId>seq_base2a</sbol:displayId>
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<sbol:start>1</sbol:start>
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<sbol:end>5</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base2/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:start>4</sbol:start>
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<sbol:end>14</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="http://partsregistry.org/cd/cd_comp/base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base1"/>
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<sbol:displayId>base1</sbol:displayId>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base1/seq_base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base1/seq_base1"/>
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<sbol:displayId>seq_base1</sbol:displayId>
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<sbol:start>4</sbol:start>
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<sbol:end>14</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2"/>
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<sbol:displayId>base_s2</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s2/base_c2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2/base_c2"/>
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<sbol:displayId>base_c2</sbol:displayId>
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<sbol:start>12</sbol:start>
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<sbol:end>22</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1"/>
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<sbol:displayId>base_s1</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s1/base_c1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1/base_c1"/>
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<sbol:displayId>base_c1</sbol:displayId>
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<sbol:start>1</sbol:start>
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<sbol:end>11</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:ComponentDefinition>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagttagcgc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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<sbol:displayId>seq_base1</sbol:displayId>
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<sbol:elements>ttgacagctagctcagtcctaggtataatgctagc</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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<sbol:displayId>seq_comp</sbol:displayId>
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<sbol:elements>acagctagctacagctagct</sbol:elements>
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<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
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</sbol:Sequence>
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</rdf:RDF>

‎InvalidFiles/sbol-10712.xml‎

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<?xml version="1.0" ?>
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<rdf:RDF xmlns:pr="http://partsregistry.org/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#">
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:displayId>cd_base_2</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_base_1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:displayId>cd_base_1</sbol:displayId>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_base1"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://partsregistry.org/cd/cd_comp">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp"/>
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<sbol:displayId>cd_comp</sbol:displayId>
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<dcterms:title>cd_comp</dcterms:title>
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<dcterms:description>Constitutive promoter</dcterms:description>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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<sbol:component>
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<sbol:Component rdf:about="http://partsregistry.org/cd/cd_comp/base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2"/>
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<sbol:displayId>base2</sbol:displayId>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_2"/>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base2/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base2/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
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<sbol:start>4</sbol:start>
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<sbol:end>14</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="http://partsregistry.org/cd/cd_comp/base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base1"/>
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<sbol:displayId>base1</sbol:displayId>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="http://partsregistry.org/cd/cd_base_1"/>
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<sbol:sourceLocation>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base1/seq_base1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base1/seq_base1"/>
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<sbol:displayId>seq_base1</sbol:displayId>
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<sbol:start>4</sbol:start>
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<sbol:end>14</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:sourceLocation>
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</sbol:Component>
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</sbol:component>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2"/>
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<sbol:displayId>base_s2</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s2/base_c2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s2/base_c2"/>
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<sbol:displayId>base_c2</sbol:displayId>
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<sbol:start>12</sbol:start>
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<sbol:end>25</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://partsregistry.org/cd/cd_comp/base_s1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1"/>
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<sbol:displayId>base_s1</sbol:displayId>
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<sbol:location>
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<sbol:Range rdf:about="http://partsregistry.org/cd/cd_comp/base_s1/base_c1">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/cd/cd_comp/base_s1/base_c1"/>
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<sbol:displayId>base_c1</sbol:displayId>
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<sbol:start>1</sbol:start>
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<sbol:end>11</sbol:end>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:Range>
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</sbol:location>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequence rdf:resource="http://partsregistry.org/seq/seq_comp"/>
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</sbol:ComponentDefinition>
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<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base2">
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<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base2"/>
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<sbol:displayId>seq_base2</sbol:displayId>
93+
<sbol:elements>ttgacagctagctcagtcctaggtataatgctagttagcgc</sbol:elements>
94+
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
95+
</sbol:Sequence>
96+
<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_base1">
97+
<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_base1"/>
98+
<sbol:displayId>seq_base1</sbol:displayId>
99+
<sbol:elements>ttgacagctagctcagtcctaggtataatgctagc</sbol:elements>
100+
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
101+
</sbol:Sequence>
102+
<sbol:Sequence rdf:about="http://partsregistry.org/seq/seq_comp">
103+
<sbol:persistentIdentity rdf:resource="http://partsregistry.org/seq/seq_comp"/>
104+
<sbol:displayId>seq_comp</sbol:displayId>
105+
<sbol:elements>acagctagctacagctagctgcc</sbol:elements>
106+
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
107+
</sbol:Sequence>
108+
</rdf:RDF>

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