1818
1919
2020def ListParser (infile_name , minqual , mincov ):
21- '''Discards every line in the TCS file with a coverage below mincov and
22- a qual below minqual'''
21+ """Discard every line in the TCS file with a coverage below mincov and
22+ a qual below minqual."""
2323 TCS = open (infile_name , 'r' )
2424 if TCS .readline ().startswith ("#TCS" ) is False :
2525 quit ("Invalid input file. Use a TCS file as input." )
@@ -51,7 +51,7 @@ def ListParser(infile_name, minqual, mincov):
5151
5252
5353def ListWriter (infile_name , outfile_name , passed ):
54- ''' Write the selected list into a file.'''
54+ """ Write the selected list into a file."""
5555 outfile = open (outfile_name , 'w' )
5656 outfile .write ("#TCS V1.0\n " )
5757 outfile .write ("#\n " )
@@ -64,7 +64,7 @@ def ListWriter(infile_name, outfile_name, passed):
6464
6565
6666def RunModule (infile_name , outfile_name , minqual , mincov ):
67- ''' Run the module.'''
67+ """ Run the module."""
6868 ShortList = ListParser (infile_name , minqual , mincov )
6969 ListWriter (infile_name , outfile_name , ShortList )
7070
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