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Replaced another sort of dead link.
1 parent 5ab99d9 commit 655f9b8

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Lines changed: 6 additions & 2 deletions

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helper-scripts/user-installer.sh

Lines changed: 6 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -37,7 +37,7 @@ fi
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seqclean_url="http://sourceforge.net/projects/seqclean/files/seqclean-x86_64.tgz/download"
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mira_url="http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/download"
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blast_url="ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-x64-linux.tar.gz"
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p7zip_url="http://sourceforge.net/projects/p7zip/files/p7zip/9.20.1/p7zip_9.20.1_x86_linux_bin.tar.bz2/download"
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p7zip_url="https://downloads.sourceforge.net/project/p7zip/p7zip/9.38.1/p7zip_9.38.1_src_all.tar.bz2"
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#URLs for pysam and it's dependencies:
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setuptools_url="https://bootstrap.pypa.io/ez_setup.py"
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cython_url="https://github.com/cython/cython/archive/$cyver.tar.gz"
@@ -56,7 +56,7 @@ echo "Downloading programs from their respective websites... Please wait."
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wget -c -t inf $seqclean_url -O $dldir/seqclean-x86_64.tgz
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wget -c -t inf $mira_url -O $dldir/mira_4.0rc4_linux-gnu_x86_64_static.tar.bz2
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wget -c -t inf $blast_url -P $dldir/
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wget -c -t inf $p7zip_url -O $dldir/p7zip_9.20.1_x86_linux_bin.tar.bz2
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wget -c -t inf $p7zip_url -P $dldir/
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wget -c -t inf $cython_url -P $dldir/
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wget -c -t inf $pysam_url -O $dldir/pysam-0.8.2.tar.gz
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@@ -91,6 +91,10 @@ sed -i '/cython/d' setup.py
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#install
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python3 setup.py install --user
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#Build p7zip
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cd $workdir/p7zip_9.38.1
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make all3
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echo ""
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echo "If you are reading this, than no errors occurred and all of the software \

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