Merge pull request #58 from magland/mountainsort5

add mountainsort5 and bump mountainsort4

Author: alejoe91

.github/workflows/test_containers_singularity.yml

@@ -17,13 +17,19 @@ jobs:
         os: ["ubuntu-latest", ]
     steps:
       - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v4
         with:
-          python-version: 3.8
+          python-version: '3.9'
 
       - uses: eWaterCycle/setup-singularity@v7
         with:
           singularity-version: 3.8.3
 
+      - name: Python version
+        run: |
+          python --version
+
       - name: Install dependencies
         run: |
           pip install tridesclous

mountainsort4/Dockerfile

@@ -7,4 +7,4 @@ RUN pip install numpy
 
 RUN pip install requests
 # Install MountainSort4
-RUN pip install mountainsort4==1.0.3
+RUN pip install mountainsort4==1.0.4

mountainsort4/build.sh

@@ -1,3 +1,3 @@
 #!/bin/bash
 
-docker build -t spikeinterface/mountainsort4-base:latest -t spikeinterface/mountainsort4-base:1.0.3 .
+docker build -t spikeinterface/mountainsort4-base:latest -t spikeinterface/mountainsort4-base:1.0.4 .

mountainsort5/Dockerfile

@@ -0,0 +1,8 @@
+FROM python:3.8
+
+# downgrade pip version to avoid dependency issues during installations
+RUN pip install --no-input pip==21.2.4
+
+RUN pip install numpy
+
+RUN pip install mountainsort5==0.1.5

mountainsort5/build.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+docker build -t spikeinterface/mountainsort5-base:latest -t spikeinterface/mountainsort5-base:0.1.5 .

mountainsort5/push.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+docker push --all-tags spikeinterface/mountainsort5-base

requirements_test.txt

@@ -1,3 +1,3 @@
-git+https://github.com/SpikeInterface/spikeinterface.git#egg=spikeinterface[full]
+spikeinterface[full] @ git+https://github.com/SpikeInterface/spikeinterface.git
 spython==0.2.1
 pytest==7.1.2