Add git to compiled images and fix combinato tests

Author: alejoe91

hdsort-compiled/Dockerfile

@@ -7,6 +7,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 

ironclust-compiled/Dockerfile

@@ -7,6 +7,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 

kilosort_no_license/kilosort-compiled/Dockerfile

@@ -7,6 +7,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 

kilosort_no_license/kilosort2-compiled/Dockerfile

@@ -7,6 +7,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 

kilosort_no_license/kilosort2_5-compiled/Dockerfile

@@ -7,6 +7,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 

kilosort_no_license/kilosort3-compiled/Dockerfile

@@ -7,6 +7,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 

tests/test_singularity_containers.py

@@ -33,6 +33,8 @@ def run_kwargs(work_dir):
         num_channels=64,
         num_segments=1
     )
+    test_recording.set_channel_gains(1)
+    test_recording.set_channel_offsets(1)
     test_recording = test_recording.save(name='toy')
     return dict(recording=test_recording, verbose=True, singularity_image=True)
 

waveclus-compiled/Dockerfile

@@ -9,6 +9,7 @@ ENV PATH="/usr/bin/mlrtapp:${PATH}"
 RUN apt-get update && \
     apt-get install -y build-essential  && \
     apt-get install -y wget && \
+    apt-get install -y git && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*