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Copy pathmorphometrics_reference.json
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352 lines (352 loc) · 14.8 KB
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{
"Morphometrics": [
{
"name": "{} Area By Object Area",
"compartments": "All",
"subcompartments": "All",
"group": "Morphology",
"description": "Ratio between sub-compartment area and the total structure area",
"units":"pixels/pixels",
"minimum": 0,
"maximum": 1,
"_id": "65315f481c874c8e9f968275"
},
{
"name": "{} Area",
"compartments": "All",
"subcompartments": "All",
"group": "Morphology",
"description": "Total area of a given sub-compartment.",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "e666ecac868643599f3e986b"
},
{
"name": "Nuclei Number",
"compartments": "All",
"subcompartments": [
"Nuclei"
],
"group": "Morphology",
"description": "Number of nuclei contained within an object.",
"units":"count",
"minimum": 0,
"maximum": "Inf",
"_id": "46c64d4f4b15494690e7949a"
},
{
"name": "Mean Aspect Ratio Nuclei",
"compartments": "All",
"subcompartments": [
"Nuclei"
],
"group": "Morphology",
"description": "Mean aspect ratio (major axis length divided by minor axis length) across all nuclei.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": 1,
"_id": "7ebcf8c7b2a9456f8fefabe4"
},
{
"name": "Standard Deviation Aspect Ratio Nuclei",
"compartments": "All",
"subcompartments": [
"Nuclei"
],
"group": "Morphology",
"description": "Standard deviation of aspect ratio (major axis length divided by minor axis length) across all nuclei.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "8b12e0e6b6b6425bbf05b57f"
},
{
"name": "Mean Nuclear Area",
"compartments": "All",
"subcompartments": [
"Nuclei"
],
"group": "Morphology",
"description": "Mean area of all nuclei within object.",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "234282172b3e428fad4c12ea"
},
{
"name": "Total Object Area",
"compartments": "All",
"subcompartments": [
"Total"
],
"group": "Morphology",
"description": "Total area of object measured in number of pixels",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "7aaa2426e54749f6a427c053"
},
{
"name": "Total Object Perimeter",
"compartments": "All",
"subcompartments": [
"Total"
],
"group": "Morphology",
"description": "Total perimeter of object boundary measured in number of pixels",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "949798f155824dd0a39d2ba8"
},
{
"name": "Total Object Aspect Ratio",
"compartments": "All",
"subcompartments": [
"Total"
],
"group": "Morphology",
"description": "Mean aspect ratio (major axis length divided by minor axis length) for an object.",
"units":"pixels",
"minimum": 0,
"maximum": 1,
"_id": "1fed29f7353d4ddcad2b5f14"
},
{
"name": "Major Axis Length",
"compartments": "All",
"subcompartments": [
"Total"
],
"group": "Morphology",
"description": "Length of longest axis of ellipse with same normalized second central moments as object.",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "1b1d18f040ca42848600dd23"
},
{
"name": "Minor Axis Length",
"compartments": "All",
"subcompartments": [
"Total"
],
"group": "Morphology",
"description": "Length of shortest axis of ellipse with same normalized second central moments as object.",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "261ccdd1baa64ae49be9e0ee"
},
{
"name": "Contrast {}",
"compartments": "All",
"subcompartments": "All",
"group": "Texture",
"description": "Measures intensity contrast between a pixel and its neighbor over the whole image. 0 for a 'constant' (all single color) image.",
"units":"none",
"minimum": 0,
"maximum": "Inf",
"_id": "1851f3071a7c495ab796c4e5"
},
{
"name": "Homogeneity {}",
"compartments": "All",
"subcompartments": "All",
"group": "Texture",
"description": "Measures the closeness of the distribution of elements in the Gray-Level Co-occurrence Matrix (GLCM). 1 for a diagonal GLCM (constant, single-color image).",
"units":"none",
"minimum": 0,
"maximum": 1,
"_id": "c362e0b53a7c4442b0a033b1"
},
{
"name": "Correlation {}",
"compartments": "All",
"subcompartments": "All",
"group": "Texture",
"description": "Measures how correlated a pixel is to its neighbor over the whole image. 1 or -1 for a perfectly correlated image and a perfectly negative correlated image, NaN for a constant image (single color).",
"units":"none",
"minimum": -1,
"maximum": 1,
"_id": "bf5abcd59cad4e4a815970de"
},
{
"name": "Energy {}",
"compartments": "All",
"subcompartments": "All",
"group": "Texture",
"description": "Sum of the square elements in the Gray-Level Co-occurrence Matrix (GLCM). 1 for a constant, single-color image.",
"units":"none",
"minimum": 0,
"maximum": 1,
"_id": "3eb2584ea4874c748da69112"
},
{
"name": "Mean Red {}",
"compartments": "All",
"subcompartments": "All",
"group": "Color",
"description": "Mean of red values (first color channel in RGB image) across a sub-compartment",
"units":"intensity",
"minimum": 0,
"maximum": 255,
"_id": "37c5e85a2ddf43c48dd5949e"
},
{
"name": "Mean Green {}",
"compartments": "All",
"subcompartments": "All",
"group": "Color",
"description": "Mean of green values (second color channel in RGB image) across a sub-compartment",
"units":"intensity",
"minimum": 0,
"maximum": 255,
"_id": "2ef7ade1fd4649a5862adb7d"
},
{
"name": "Mean Blue {}",
"compartments": "All",
"subcompartments": "All",
"group": "Color",
"description": "Mean of blue values (third color channel in RGB image) across a sub-compartment.",
"units":"intensity",
"minimum": 0,
"maximum": 255,
"_id": "c77adb047d9d4f49847049d7"
},
{
"name": "Standard Deviation Red {}",
"compartments": "All",
"subcompartments": "All",
"group": "Color",
"description": "Standard deviation of red values (first color channel in RGB image) across a sub-compartment",
"units":"intensity",
"minimum": 0,
"maximum": "Inf",
"_id": "f1962c54db5240079ade654a"
},
{
"name": "Standard Deviation Green {}",
"compartments": "All",
"subcompartments": "All",
"group": "Color",
"description": "Standard deviation of green values (second color channel in RGB image) across a sub-compartment",
"units":"intensity",
"minimum": 0,
"maximum": "Inf",
"_id": "9b93044ed4304b1b9e0519f1"
},
{
"name": "Standard Deviation Blue {}",
"compartments": "All",
"subcompartments": "All",
"group": "Color",
"description": "Standard deviation of blue values (third color channel in RGB image) across a sub-compartment",
"units":"intensity",
"minimum": 0,
"maximum": "Inf",
"_id": "8cf66d3bd45049b9b0ef9502"
},
{
"name": "Sum Distance Transform By Object Area {}",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Sum of the distance transform values divided by total object area for a sub-compartment",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "fb65ecbde3ef42649c8dc8e7"
},
{
"name": "Sum Distance Transform {}",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Sum of the distance transform values for a sub-compartment",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "c1c301beaa8f4854a7135c3e"
},
{
"name": "Sum Distance Transform by {} Area",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Sum of distance transform values for a sub-compartment divided by total area of the same sub-compartment.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "61f3f5d8fe934d4793631481"
},
{
"name": "Mean Distance Transform By Object Area {}",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Mean of distance transform values for a sub-compartment divided by total object area.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "b00b94185fd249ddabcf3b0e"
},
{
"name": "Mean Distance Transform By {} Area",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Mean of distance transform values for a sub-compartment divided by total area of the same sub-compartment.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "010b45aa9f8c44f1b0470bfc"
},
{
"name": "Mean Distance Transform {}",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Mean distance transform values for a sub-compartment.",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "1a0315386f584fd993373dcd"
},
{
"name": "Max Distance Transform By Object Area {}",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Maximum distance transform value for a sub-compartment divided by total object area.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "84f4e515be5e4f0292d015a3"
},
{
"name": "Max Distance Transform By {} Area",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Maximum distance transform value for a sub-compartment divided by total area of the same sub-compartment.",
"units":"pixels/pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "2631867ebdcc4cf5a5112232"
},
{
"name": "Max Distance Transform {}",
"compartments": "All",
"subcompartments": "All",
"group": "Distance Transform",
"description": "Maximum distance transform value for a sub-compartment.",
"units":"pixels",
"minimum": 0,
"maximum": "Inf",
"_id": "fd739724e54e4cf799d55a61"
}
]
}