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‎about.html‎

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</div>
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<div class="col-md-4">
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<div class="thumbnail" style="border: 0;">
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<img src="images/people/lucian_bio.jpg" alt="Lucian Smith" class="img-rounded" style="height: 200px;">
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<img src="images/people/nickerson_bio.jpg" alt="David Nickerson" class="img-rounded" style="height: 200px;">
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<div class="caption">
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<p style="font-weight: bold">Lucian Smith (2022-2024; 2016-2018)</p>
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<p>Lucian Smith (PhD. in Biochemistry) works as a Research Scientist for both the University of Washington with the <a href="http://sys-bio.org/">Sauro lab</a> as a <a href="https://github.com/sys-bio/roadrunner">Roadrunner</a> and <a href="https://github.com/sys-bio/tellurium">Tellurium</a> developer, and has worked for Caltech with the <a href="http://sbml.org/About#The_SBML_Team">SBML Team</a>. He is the co-creator of <a href="http://antimony.sourceforge.net/">Antimony</a> and <a href="http://phrasedml.sf.net/">phraSED-ML</a>, has been an SBML editor, and has developed a variety of SBML package specifications.</p>
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<p style="font-weight: bold">David Nickerson (2019-2021; 2015-2017; 2011-2013)</p>
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<p><a href="https://unidirectory.auckland.ac.nz/profile/dnic019">David Nickerson</a> (PhD in Bioengineering) is a Senior Research Fellow in the <a href="http://www.abi.auckland.ac.nz" class="external text" title="http://www.abi.auckland.ac.nz/">Auckland Bioengineering Institute</a> where he leads the Auckland Physiome Group, working on several projects addressing reproducibility, discoverability, and reusability in computational physiology. David is also involved in many aspects of the CellML project as well as various cardiac modeling projects. He also develops several CellML-related software tools and is the current CellML delegate to the COMBINE coordination group.</p>
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<dd><a href="http://facultydirectory.uchc.edu/profile?profileId=Moraru-Ion">Ion Moraru</a> (M.D., Ph. D.) is a Professor of Cell Biology in the <a href="http://www.ccam.uchc.edu/">Richard D. Berlin Center for Cell Analysis and Modeling</a> at the University of Connecticut.</dd>
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<img src="images/people/nickerson_bio.jpg" alt="David Nickerson" class="img-rounded"
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<dt>David Nickerson (2019-2021; 2015-2017; 2011-2013)</dt>
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<dd><a href="https://unidirectory.auckland.ac.nz/profile/dnic019">David Nickerson</a> (PhD in Bioengineering) is a Senior Research Fellow in the <a href="http://www.abi.auckland.ac.nz" class="external text" title="http://www.abi.auckland.ac.nz/">Auckland Bioengineering Institute</a> where he leads the Auckland Physiome Group, working on several projects addressing reproducibility, discoverability, and reusability in computational physiology. David is also involved in many aspects of the CellML project as well as various cardiac modeling projects. He also develops several CellML-related software tools and is the current CellML delegate to the COMBINE coordination group.</dd>
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<img src="images/people/brett_bio.jpg" alt="Brett Olivier" class="img-rounded"
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<dd><a href="https://bioe.uw.edu/portfolio-items/sauro/">Herbert Sauro</a> (PhD in Systems Biology) is a Professor in the University of Washington, Department of Bioengineering. Herbert has been involved in standards and software development in systems biology for a long time and was one of the founding members of the original SBML team. The <a href="http://tellurium.analogmachine.org/">Tellurium Python modeling platform</a> which has been developed with his collaborators and students, supports the current SED-ML and COMBINE standards.</dd>
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<tr>
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<img src="images/people/lucian_bio.jpg" alt="Lucian Smith" class="img-rounded"
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style="width: 60px;"/>
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<dt>Lucian Smith (2016-2018)</dt>
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<dd>Lucian Smith (PhD. in Biochemistry) works as a Research Scientist for both the University of Washington with the <a href="http://sys-bio.org/">Sauro lab</a>, and for Caltech with the <a href="http://sbml.org/About#The_SBML_Team">SBML Team</a>. He is the co-creator of <a href="http://antimony.sourceforge.net/">Antimony</a> and, more recently, of <a href="http://phrasedml.sf.net/">phraSED-ML</a>, and has been an SBML editor, working extensively with the SBML Hierarchical Model Composition specification.</dd>
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<img src="images/people/waltemath_bio.jpg" alt="Dagmar Waltemath" class="img-rounded"

‎examples.html‎

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<div>
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Verified simulation tool(s):
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<ul class="comma-separated-list">
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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</div>
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Verified simulation tool(s):
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<ul class="comma-separated-list">
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<li><a href="https://biosimulators.org/simulators/pysces">PySceS</a> 1.0.0</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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Verified simulation tool(s):
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<ul class="comma-separated-list">
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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Verified simulation tool(s):
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<ul class="comma-separated-list">
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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Verified simulation tool(s):
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<ul class="comma-separated-list">
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/gillespy2">GillesPy2</a> 1.6.6</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/pysces">PySceS</a> 1.0.0</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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<li><a href="https://biosimulators.org/simulators/pysces">PySceS</a> 1.0.0</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.1</li>
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<li><a href="https://biosimulators.org/simulators/tellurium">tellurium</a> 2.2.8</li>
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‎examples/L1V3/L1V3_plotting-data-numl.omex‎

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‎examples/L1V3/L1V3_plotting-data-numl/plotting-data-numl.sedml‎

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<dataDescription id="Data1" name="oscillator data" source="./oscli.numl" format="urn:sedml:format:numl">
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<compositeDescription indexType="double" id="time" name="time" xmlns="http://www.numl.org/numl/
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<compositeDescription indexType="double" id="time" name="time" xmlns="http://www.numl.org/numl/level1/version1">
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‎examples/L1V3/SED-ML_L1V3_examples.zip‎

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‎site_creator/create_static_html.py‎

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template = env.get_template(html_template)

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