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removed print statements. things are working
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build/broad_sanger/05b_separate_datasets.py

Lines changed: 0 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -77,15 +77,11 @@ def main():
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#One by one, filter other Omics files, write to file, delete from mem.
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for omics in omics_datatypes:
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ds = dataset_sources[dataset][0]
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print(f"ds: {ds}")
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omics_filename_in = f"{ds}_{omics}.csv"
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print(f"omics_filename_in: {omics_filename_in}")
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if os.path.isfile(omics_filename_in + ".gz"):
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omics_filename_in += ".gz"
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print(f"omics_filename_in: {omics_filename_in}")
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omics_filename_out = f"/tmp/{dataset}_{omics}.csv".lower()
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print(f"omics_filename_out: {omics_filename_out}")
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omics_df = pl.read_csv(omics_filename_in)
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omics_df = omics_df.filter(pl.col("improve_sample_id").is_in(exp_improve_sample_ids))
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# omics_df = omics_df.filter(pl.col("source").is_in(dataset_sources[dataset]))

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