fix to use updated cd.Dataset.format() function

ymahlich · ymahlich · commit c919530e8bdc · 2025-01-30T16:41:34.000-08:00
diff --git a/scripts/prepare_data_for_improve.py b/scripts/prepare_data_for_improve.py
@@ -553,7 +553,7 @@ def merge_master_tables(args, data_sets, data_type: str='transcriptomics'):
                 getattr(data_sets[data_set], data_type, None) is not None
             ):
                 dfs_to_merge.append(
-                    data_sets[data_set].format(data_type=data_type)
+                    data_sets[data_set].format(data_type=data_type).transpose()
                     )
 
     merged_data = None

Original file line number	Diff line number	Diff line change
`@@ -553,7 +553,7 @@ def merge_master_tables(args, data_sets, data_type: str='transcriptomics'):`
`553`	`553`	`getattr(data_sets[data_set], data_type, None) is not None`
`554`	`554`	`):`
`555`	`555`	`dfs_to_merge.append(`
`556`		`- data_sets[data_set].format(data_type=data_type)`
	`556`	`+ data_sets[data_set].format(data_type=data_type).transpose()`
`557`	`557`	`)`
`558`	`558`
`559`	`559`	`merged_data = None`