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added novartis to build_dataset.py
1 parent 3a0d8fe commit c0a68ba

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Lines changed: 4 additions & 2 deletions

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build/build_dataset.py

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -48,7 +48,8 @@ def process_docker(dataset,validate):
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'genes': ['genes'],
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'upload': ['upload'],
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'crcpdo': ['crcpdo'],
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'bladderpdo': ['bladderpdo']
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'bladderpdo': ['bladderpdo'],
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'novartispdx': ['novartispdx']
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}
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# Collect container names to build based on the dataset provided. Always build 'genes'.
@@ -131,7 +132,8 @@ def process_omics(executor, dataset, should_continue):
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'sarcpdo': ['mutations', 'transcriptomics'],
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'pancpdo': ['transcriptomics'],
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'bladderpdo': ['copy_number', 'mutations', 'transcriptomics'],
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'crcpdo':['copy_number', 'mutations', 'transcriptomics']
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'crcpdo':['copy_number', 'mutations', 'transcriptomics'],
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'novartispdx':['copy_number', 'mutations', 'transcriptomics']
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}
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expected_omics = dataset_omics_files.get(dataset, [])

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