created build_drugs.sh

Author: alexandriai168

build/liverpdo/build_drugs.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+set -euo pipefail
+
+trap 'echo "Error on or near line $LINENO while executing: $BASH_COMMAND"; exit 1' ERR
+
+# running the drug python script
+echo "Running 03-drug-crcpdo.py with token and PrevDrugs $1."
+python3 03-drug-liverpdo.py --Download --Drug --Token $SYNAPSE_AUTH_TOKEN --PrevDrugs $1
+
+# running the drug descriptor python script
+python3 build_drug_desc.py --drugtable /tmp/liverpdo_drugs.tsv --desctable /tmp/liverpdo_drug_descriptors.tsv.gz