final changes for build

Author: alexandriai168

build/liverpdo/02-omics-liverpdo.py

@@ -226,7 +226,7 @@ def map_transcriptomics(transciptomics_data, improve_id_data, entrez_data):
 
     # read in data
     if isinstance(transciptomics_data, pd.DataFrame) == False:
-        transciptomics_data = pd.read_csv(transciptomics_data, sep='\t')
+        transciptomics_data = pd.read_csv(transciptomics_data)
 
     if isinstance(improve_id_data, pd.DataFrame) == False:
         improve_id_data = pd.read_csv(improve_id_data)

build/liverpdo/03-drug-liverpdo.py

@@ -68,7 +68,7 @@ def create_liverpdo_drug_data(drug_info_path:str, prevDrugFilepath:str, output_d
     # get new drug names
     new_drug_names = new_drugs_df['chem_name'].unique()
     # call function that gets info for these drugs
-    update_dataframe_and_write_tsv(new_drug_names,output_drug_data_path)
+    update_dataframe_and_write_tsv(unique_names = new_drug_names,output_filename = output_drug_data_path)
 
     ############################