All working now

jjacobson95 · jjacobson95 · commit 953370323d33 · 2025-07-24T16:54:18.000-07:00
diff --git a/build/mpnst/build_exp.sh b/build/mpnst/build_exp.sh
@@ -5,4 +5,5 @@ trap 'echo "Error on or near line $LINENO while executing: $BASH_COMMAND"; exit
 
 echo "Running 03_get_experiments.R with $SYNAPSE_AUTH_TOKEN, $1, and $2."
 Rscript 03_get_experiments.R $SYNAPSE_AUTH_TOKEN $1 $2 mpnst
+rm /tmp/mpnst_pdx_experiments.tsv /tmp/mpnst_mt_experiments.tsv /tmp/mpnst_mt_curve_data.tsv /tmp/mpnst_pdx_curve_data.tsv
 
diff --git a/build/utils/calc_pdx_metrics.py b/build/utils/calc_pdx_metrics.py
@@ -415,4 +415,4 @@ def get_drug_stats(df, control='control'):
     return sing, comb
 
 if __name__=='__main__':
-    main()
+    main()

Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,5 @@ trap 'echo "Error on or near line $LINENO while executing: $BASH_COMMAND"; exit`
`5`	`5`
`6`	`6`	`echo "Running 03_get_experiments.R with $SYNAPSE_AUTH_TOKEN, $1, and $2."`
`7`	`7`	`Rscript 03_get_experiments.R $SYNAPSE_AUTH_TOKEN $1 $2 mpnst`
	`8`	`+rm /tmp/mpnst_pdx_experiments.tsv /tmp/mpnst_mt_experiments.tsv /tmp/mpnst_mt_curve_data.tsv /tmp/mpnst_pdx_curve_data.tsv`
`8`	`9`