updating expected files

Author: alexandriai168

build/crcPDO/build_exp.sh

@@ -9,3 +9,6 @@ python3 04-experiments-crcpdo.py --Download --Experiment --Token $SYNAPSE_AUTH_T
 
 # running the drug descriptor python script
 python3 fit_curve.py --input /tmp/crcpdo_experiments_for_curve_fitting.tsv --output /tmp/crcpdo_experiments.tsv
+
+# change name of script 
+mv crcpdo_experiments.tsv.0 crcpdo_experiments.tsv

build/crcpdo/build_exp.sh

@@ -9,3 +9,6 @@ python3 04-experiments-crcpdo.py --Download --Experiment --Token $SYNAPSE_AUTH_T
 
 # running the drug descriptor python script
 python3 fit_curve.py --input /tmp/crcpdo_experiments_for_curve_fitting.tsv --output /tmp/crcpdo_experiments.tsv
+
+# change name of script 
+mv crcpdo_experiments.tsv.0 crcpdo_experiments.tsv

schema/expected_files.yaml

@@ -252,9 +252,13 @@ datasets:
       file: /tmp/crcpdo_samples.csv
     - target_class: Transcriptomics
       file: /tmp/crcpdo_transcriptomics.csv
+    - target_class: Copy Number
+      file: /tmp/crcpdo_copy_number.csv
+    - target_class: Mutations
+      file: /tmp/crcpdo_mutations.csv
     - target_class: Experiments
       file: /tmp/crcpdo_experiments.tsv
     - target_class: Drug
       file: /tmp/crcpdo_drugs.tsv
     - target_class: Drug Descriptor
-      file: /tmp/crcpdo_drug_descriptors.tsv
+      file: /tmp/crcpdo_drug_descriptors.csv