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added patient derived org to samples py and coderdata.yaml
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build/liverpdo/01-samples-liverpdo.py

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@@ -87,7 +87,7 @@ def generate_sample_file(samples_data_path:str = None, prev_samples_path:str = "
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samples_df['cancer_type'] = samples_df['other_id'].apply(lambda x: map_substring(x, ctype_dict))
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samples_df['other_id_source'] = "Synapse"
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samples_df['species'] = "Homo sapiens (Human)"
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samples_df['model_type'] = "organoid"
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samples_df['model_type'] = "patient derived organoid"
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# check other_id doesn't clash with previous sample names

schema/coderdata.yaml

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@@ -246,6 +246,7 @@ enums:
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tumor:
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patient derived xenograft:
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xenograft derived organoid:
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patient derived organoid:
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ex vivo:
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Variant:
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permissible_values:

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