csv to tsv for drug descriptors

Author: alexandriai168

build/crcPDO/build_drugs.sh

@@ -9,4 +9,4 @@ echo "Running 03-drug-crcpdo.py with token and PrevDrugs $1."
 python3 03-drug-crcpdo.py --Download --Drug --Token $SYNAPSE_AUTH_TOKEN --PrevDrugs $1
 
 # running the drug descriptor python script
-python3 build_drug_desc.py --drugtable /tmp/crcpdo_drugs.tsv --desctable /tmp/crcpdo_drug_descriptors.csv.gz
+python3 build_drug_desc.py --drugtable /tmp/crcpdo_drugs.tsv --desctable /tmp/crcpdo_drug_descriptors.tsv.gz

build/crcpdo/build_drugs.sh

@@ -9,4 +9,4 @@ echo "Running 03-drug-crcpdo.py with token and PrevDrugs $1."
 python3 03-drug-crcpdo.py --Download --Drug --Token $SYNAPSE_AUTH_TOKEN --PrevDrugs $1
 
 # running the drug descriptor python script
-python3 build_drug_desc.py --drugtable /tmp/crcpdo_drugs.tsv --desctable /tmp/crcpdo_drug_descriptors.csv.gz
+python3 build_drug_desc.py --drugtable /tmp/crcpdo_drugs.tsv --desctable /tmp/crcpdo_drug_descriptors.tsv.gz

schema/expected_files.yaml

@@ -261,4 +261,4 @@ datasets:
     - target_class: Drug
       file: /tmp/crcpdo_drugs.tsv
     - target_class: Drug Descriptor
-      file: /tmp/crcpdo_drug_descriptors.csv
+      file: /tmp/crcpdo_drug_descriptors.tsv