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fixed transcriptomics typo
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build/novartispdx/02-omics-novartispdx.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -291,7 +291,7 @@ def map_mutations_novPDX(mutation_data, improve_id_data, entrez_data):
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exit()
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else:
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print("Starting transcriptomics data.")
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transcriptomics_df_final = map_transcriptomics_novPDX(transciptomics_data = "/tmp/raw_rnaseq_data.csv", improve_id_data = "/tmp/novartispdx_samples.csv", entrez_data = "/tmp/genes.csv")
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transcriptomics_df_final = map_transcriptomics_novPDX(transcriptomics_data = "/tmp/raw_rnaseq_data.csv", improve_id_data = "/tmp/novartispdx_samples.csv", entrez_data = "/tmp/genes.csv")
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transcriptomics_df_final.to_csv("/tmp/novartispdx_transcriptomics.csv", index=False)
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if args.mutations:

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