Merge pull request #6 from OpenDataAnalytics/dockerize

Dockerize

Author: dorukozturk

client/.env.production

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+VUE_APP_API_URL=http://localhost:9000/api/v1

docker/.gitignore

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+volumes/

docker/docker-compose.yml

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+---
+version: '3'
+services:
+  mongo:
+    image: mongo:latest
+    volumes:
+      - mongo_db:/data/db
+
+  girder:
+    build:
+      context: ../
+      dockerfile: docker/girder.Dockerfile
+    volumes:
+      - girder_assetstore:/home/assetstore
+    depends_on:
+      - mongo
+    ports:
+      - "9000:8080"
+
+  nginx:
+    build:
+      context: ../
+      dockerfile: docker/nginx.Dockerfile
+    depends_on:
+      - girder
+    ports:
+      - "9001:80"
+
+  provision:
+    build:
+      context: ../
+      dockerfile: docker/provision.Dockerfile
+    depends_on:
+      - nginx
+
+volumes:
+  mongo_db:
+  girder_assetstore:

docker/girder.Dockerfile

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+FROM girder/girder:latest-py3
+
+WORKDIR /home
+
+COPY docker/provision provision
+COPY server /home/resonanteco
+
+RUN pip install -e /home/resonanteco && girder build
+
+ENTRYPOINT ["/home/provision/girder_entrypoint.sh"]

docker/nginx.Dockerfile

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+FROM nginx:stable-alpine
+
+COPY ./client/dist/ /usr/share/nginx/html
+
+COPY ./docker/nginx.conf /etc/nginx/nginx.conf

docker/nginx.conf

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+events { worker_connections 1024; }
+
+http {
+    include    /etc/nginx/mime.types;
+    # include    /etc/nginx/proxy.conf;
+    # include    /etc/nginx/fastcgi.conf;    
+    
+    upstream girder {
+        server girder:8080;
+    }
+
+    client_max_body_size 100M;
+
+    server {
+
+        root /usr/share/nginx/html;
+
+        listen 80;
+
+        location /api/ {
+            proxy_set_header X-Real-IP $remote_addr;
+            proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+            proxy_set_header X-NginX-Proxy true;
+            proxy_pass http://girder/api/;
+            proxy_ssl_session_reuse off;
+            proxy_set_header Host $http_host;
+            proxy_redirect off;
+        }
+
+        location / {
+            try_files $uri $uri/ /index.html;
+        }
+    }
+}

docker/provision.Dockerfile

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+FROM python:3.7
+
+RUN pip install girder-client
+
+WORKDIR /home
+
+COPY docker/provision provision
+
+ENTRYPOINT ["/home/provision/provision_entrypoint.sh"]

docker/provision/girder.py

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+import os
+
+import girder_client
+import requests
+
+ADMIN_USER = 'admin'
+ADMIN_PASS = 'letmein'
+
+
+def setGirderSetting(key, value, gc):
+    return gc.put("/system/setting",
+           parameters={
+               "key"  : key,
+               "value": value
+           }
+           )
+
+
+def createInitialUser(apiUrl):
+    # no try required here, just get a 400 on failure
+    res = requests.post(
+        '{}/user'.format(apiUrl),
+        data={"login"    : ADMIN_USER, "email": "admin@admin.com",
+              "firstName": ADMIN_USER, "password": ADMIN_PASS,
+              "lastName" : ADMIN_USER, "admin": True})
+
+
+def createIngestFolders(gc):
+    try:
+        collection = gc.createCollection('ResonantEco')
+    except girder_client.HttpError as exc:
+        collection = gc.resourceLookup('/collection/ResonantEco')
+    datasetsFolder = gc.loadOrCreateFolder('datasets', collection['_id'], 'collection')
+    gc.loadOrCreateFolder('LLNL', datasetsFolder['_id'], 'folder')
+    gc.loadOrCreateFolder('JGI', datasetsFolder['_id'], 'folder')
+
+
+def createAssetstore(gc, name='assetstore', path='/home/assetstore'):
+    try:
+        res = gc.post("/assetstore",
+            parameters={'name': name, 'type': 0,
+                        'root': path})
+    except girder_client.HttpError as exc:
+        print(exc)
+
+
+def check_admin_login(apiUrl):
+    gc = girder_client.GirderClient(apiUrl=apiUrl)
+
+    try:
+        gc.authenticate(ADMIN_USER, ADMIN_PASS)
+    except girder_client.AuthenticationError:
+        print('Cannot login admin, it probably does not exist')
+        return False
+    return True
+
+
+def run_girder_init(apiUrl):
+    createInitialUser(apiUrl)
+    gc = girder_client.GirderClient(apiUrl=apiUrl)
+    gc.authenticate("admin", "letmein")
+    setGirderSetting("core.cors.allow_origin", "http://localhost:8080, http://localhost:9001", gc)
+    createAssetstore(gc)
+    createIngestFolders(gc)
+
+if __name__ == '__main__':
+    GIRDER_INNER_HOST = 'girder'
+    GIRDER_INNER_PORT = os.environ.get('GIRDER_INNER_PORT', 8080)
+    if not GIRDER_INNER_PORT:
+        raise RuntimeError('You must set the env variable GIRDER_INNER_PORT')
+
+    girder_url = "http://{host}:{port}/api/v1".format(host=GIRDER_INNER_HOST,
+                                                      port=GIRDER_INNER_PORT)
+    run_girder_init(girder_url)

docker/provision/girder_entrypoint.sh

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+#!/bin/bash
+
+girder serve --database mongodb://mongo:27017/girder --host 0.0.0.0

docker/provision/provision_entrypoint.sh

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+#!/bin/bash
+
+sleep 10
+python3 /home/provision/girder.py