refinements to readme

Author: Chaitanya CHINTALURI

README.rst

@@ -6,21 +6,25 @@ This 2.0 version of kCSD inverse method proposed in python3
 Relevant Papers
 ---------------
 
-#. J. Potworowski, W. Jakuczun, S. Łȩski, D. K. Wójcik
-  "Kernel Current Source Density Method"
-  Neural Comput 2012; 24 (2): 541–575.
-  doi: https://doi.org/10.1162/NECO_a_00236
+Paper 1
 
-#. C. Chintaluri, M. Bejtka, W. Średniawa, M. Czerwiński, J. M. Dzik, J. Jędrzejewska-Szmek, K. Kondrakiewicz, E. Kublik, D. K. Wójcik
-  "What we can and what we cannot see with extracellular multielectrodes"
-  PLoS Computational Biology (2021), 17(5): e1008615.
-  doi: https://doi.org/10.1371/journal.pcbi.1008615
+J. Potworowski, W. Jakuczun, S. Łȩski, D. K. Wójcik
 
-#. C. Chintaluri, M. Bejtka, W. Średniawa, M. Czerwiński, J. M. Dzik, J. Jędrzejewska-Szmek, D. K. Wójck
-  "kCSD-python, reliable current source density estimation with quality control"
-  bioRxiv
-  doi: https://doi.org/10.1101/708511
+"Kernel Current Source Density Method", Neural Comput 2012; 24 (2): 541–575, doi: https://doi.org/10.1162/NECO_a_00236
 
+----
+Paper 2
+
+C. Chintaluri, M. Bejtka, W. Średniawa, M. Czerwiński, J. M. Dzik, J. Jędrzejewska-Szmek, K. Kondrakiewicz, E. Kublik, D. K. Wójcik
+
+"What we can and what we cannot see with extracellular multielectrodes", PLoS Computational Biology (2021), 17(5): e1008615, doi: https://doi.org/10.1371/journal.pcbi.1008615
+----
+Paper 3
+
+C. Chintaluri, M. Bejtka, W. Średniawa, M. Czerwiński, J. M. Dzik, J. Jędrzejewska-Szmek, D. K. Wójck
+
+"kCSD-python, reliable current source density estimation with quality control", bioRxiv, doi: https://doi.org/10.1101/708511
+----
 
 Paper 1 is the original paper with software code in Matlab.
 Paper 2 is an improvement and development of the paper 1.

docs/source/TUTORIALS.rst

@@ -1,13 +1,33 @@
 Tutorials
 ---------
 
-Online version
+kcsd-python library comes with three extensive tutorials. These
+tutorials can be explored online or installed on your desktop computer
+depending on your usage. To simple test it out try the online version
+first, and if required install the python package.
+
+**Online version**
+
+To play around with the library without any installation, you can run
+the tutorials on Google collaboratory in a web-browser. **Note:** the
+results from a browser are not saved and cannot be retreived. If you
+wish to have the results stored somewhere, please use the desktop
+version.
+
+**Desktop version**
+
+This requires you to install the kCSD-package and additionally to
+install jupyter notebook on your desktop.
+
+..  code-block:: bash
+
+		 git clone https://github.com/Neuroinflab/kCSD-python.git
+		 cd kCSD-python
+		 pip install .
+		 pip install jupyterlab
+
+
 
-kcsd-python library comes with three extensive tutorials (at this
-moment, more soon). These can be tested using Jupyter notebook on your
-desktop after installing the kCSD-python package. Alternatively, they
-can be played around with without any installation on Google collaboratory in a
-web-browser. **Note: the results from a browser are not saved, and cannot be retreived.**
 
 Basic Features
 ~~~~~~~~~~~~~~
@@ -26,15 +46,15 @@ reconstructions.
 The tutorial is provided with Google collaboratory, click the button below to
 interact with it in a browser, no installation necessary.
 
-`Basic tutorial<https://colab.research.google.com/drive/1M7fCR5iZ9c7SAZWWoq9WLfFpk7pCaufd?usp=sharing>`_
+`Basic tutorial <https://colab.research.google.com/drive/1M7fCR5iZ9c7SAZWWoq9WLfFpk7pCaufd?usp=sharing>`_
 
 ..
       .. image:: https://mybinder.org/badge.svg
 	 :target: https://mybinder.org/v2/gh/Neuroinflab/kCSD-python/master?filepath=tutorials%2Ftutorial_basic.ipynb
 
 
 For a non-interactive version of this tutorial, see
-`Tutorail1<https://github.com/Neuroinflab/kCSD-python/blob/master/tutorials/tutorial_basic.ipynb>`_.
+`Tutorail1 <https://github.com/Neuroinflab/kCSD-python/blob/master/tutorials/tutorial_basic.ipynb>`_.
 
 
 
@@ -54,15 +74,15 @@ buttons (Kernel>Restart & Run All).
 The tutorial is provided with Google collaboratory, click the button below to
 interact with it in a browser, no installation necessary.
 
-`Advanced tutorial<https://colab.research.google.com/drive/1gIuBJ2XzOGmgnRuxKguHevcYoE6eY_o1?usp=sharing>`_
+`Advanced tutorial <https://colab.research.google.com/drive/1gIuBJ2XzOGmgnRuxKguHevcYoE6eY_o1?usp=sharing>`_
 
 ..
    .. image:: https://mybinder.org/badge.svg
       :target: https://mybinder.org/v2/gh/Neuroinflab/kCSD-python/master?filepath=tutorials%2Ftutorial_advanced.ipynb
 
 
 For a non-inteactive version of this tutorial, see
-`Tutorail2<https://github.com/Neuroinflab/kCSD-python/blob/master/tutorials/tutorial_advanced.ipynb>`_.
+`Tutorail2 <https://github.com/Neuroinflab/kCSD-python/blob/master/tutorials/tutorial_advanced.ipynb>`_.
 
 sKCSD Tutorial
 ~~~~~~~~~~~~~~
@@ -72,11 +92,11 @@ of a single neuron provided the morphology of the said neuron is known.
 This methods has been described extensively here: https://doi.org/10.7554/eLife.29384
 
 
-`sKCSD tutorial<https://colab.research.google.com/drive/1tjOvC5-OTteiGT_f-MBQ3hqN7P3i1P8e?usp=sharing>`_
+`sKCSD tutorial <https://colab.research.google.com/drive/1tjOvC5-OTteiGT_f-MBQ3hqN7P3i1P8e?usp=sharing>`_
 
 
 For a non-inteactive version of this tutorial, see
-`sKCSD Tutorial<https://github.com/Neuroinflab/kCSD-python/blob/master/tutorials/skcsd_tutorial.ipynb>`_
+`sKCSD Tutorial <https://github.com/Neuroinflab/kCSD-python/blob/master/tutorials/skcsd_tutorial.ipynb>`_
 
 
 More Tutorials