update old links pointing to rst files

Author: fdiblen

README.dev.md

@@ -10,9 +10,9 @@ path/to/package/
 ├── .gitignore
 ├── pyproject.toml
 ├── .prospector.yml
-├── CHANGELOG.rst
-├── CODE_OF_CONDUCT.rst
-├── CONTRIBUTING.rst
+├── CHANGELOG.md
+├── CODE_OF_CONDUCT.md
+├── CONTRIBUTING.md
 ├── docs
 │   ├── conf.py
 │   ├── index.rst
@@ -24,8 +24,8 @@ path/to/package/
 │   ├── __init__.py
 │   ├── __version__.py
 │   └── package.py
-├── README.rst
-├── project_setup.rst
+├── README.md
+├── project_setup.md
 ├── requirements.txt
 ├── setup.cfg
 ├── setup.py

README.md

@@ -13,8 +13,8 @@ an empty Python package. Features include:
 - [Default Github actions]({{cookiecutter.project_name}}/.github/workflows) for building, testing and deployment
 - Code style checking,
 - [Editorconfig]({{cookiecutter.project_name}}/.editorconfig),
-- Miscellaneous files, such as [Change log]({{cookiecutter.project_name}}/CHANGELOG.rst), [Code of Conduct]({{cookiecutter.project_name}}/CODE_OF_CONDUCT.rst), and [Contributing guidelines]({{cookiecutter.project_name}}/CONTRIBUTING.rst),
-- A [README]({{cookiecutter.project_name}}/README.rst) and [a separate document]({{cookiecutter.project_name}}/project_setup.md) with extensive documentation about project setup.
+- Miscellaneous files, such as [Change log]({{cookiecutter.project_name}}/CHANGELOG.md), [Code of Conduct]({{cookiecutter.project_name}}/CODE_OF_CONDUCT.md), and [Contributing guidelines]({{cookiecutter.project_name}}/CONTRIBUTING.md),
+- A [README]({{cookiecutter.project_name}}/README.md) and [a separate document]({{cookiecutter.project_name}}/project_setup.md) with extensive documentation about project setup.
 - Continuous code quality and code coverage reporting using [Sonarcloud](https://sonarcloud.io/)
 
 ## Badges
@@ -76,10 +76,10 @@ Good job! You have now generated the skeleton for your package:
 
 ```text
 my-python-project/
-├── CHANGELOG.rst
+├── CHANGELOG.md
 ├── CITATION.cff
-├── CODE_OF_CONDUCT.rst
-├── CONTRIBUTING.rst
+├── CODE_OF_CONDUCT.md
+├── CONTRIBUTING.md
 ├── docs
 │   ├── conf.py
 │   ├── index.rst
@@ -96,7 +96,7 @@ my-python-project/
 │   └── __version__.py
 ├── NOTICE
 ├── project_setup.md
-├── README.rst
+├── README.md
 ├── setup.cfg
 ├── setup.py
 └── tests

{{cookiecutter.project_name}}/MANIFEST.in

@@ -1,4 +1,4 @@
 include CITATION.cff
 include LICENSE
 include NOTICE
-include README.rst
+include README.md

{{cookiecutter.project_name}}/project_setup.md

@@ -80,7 +80,7 @@ help you decide which tool to use for packaging.
   file can be safely removed (or you can just leave it there).
 - To put the documentation on [ReadTheDocs](https://readthedocs.org), log in to your ReadTheDocs account, and import
   the repository (under 'My Projects').
-  - Include the link to the documentation in your project's [README.rst](README.rst).
+  - Include the link to the documentation in your project's [README.md](README.md).
 - [Relevant section in the guide](https://guide.esciencecenter.nl/#/best_practices/language_guides/python?id=writingdocumentation)
 
 ## Coding style conventions and code quality
@@ -122,7 +122,7 @@ save it as a secret called `PYPI_TOKEN` on [Settings page]({{cookiecutter.reposi
 - The project is set up with a logging example.
 - [Relevant section in the guide](https://guide.esciencecenter.nl/#/best_practices/language_guides/python?id=logging)
 
-## CHANGELOG.rst
+## CHANGELOG.md
 
 - Document changes to your software package
 - [Relevant section in the guide](https://guide.esciencecenter.nl/#/best_practices/releases?id=changelogmd)
@@ -133,12 +133,12 @@ save it as a secret called `PYPI_TOKEN` on [Settings page]({{cookiecutter.reposi
 - It only makes sense to do this once there is something to cite (e.g., a software release with a DOI).
 - Follow the [making software citable](https://guide.esciencecenter.nl/#/citable_software/making_software_citable) section in the guide.
 
-## CODE\_OF\_CONDUCT.rst
+## CODE\_OF\_CONDUCT.md
 
 - Information about how to behave professionally
 - [Relevant section in the guide](https://guide.esciencecenter.nl/#/best_practices/documentation?id=code-of-conduct)
 
-## CONTRIBUTING.rst
+## CONTRIBUTING.md
 
 - Information about how to contribute to this software package
 - [Relevant section in the guide](https://guide.esciencecenter.nl/#/best_practices/documentation?id=contribution-guidelines)