#299 Update github actions

Author: kwabenantim

.flake8

@@ -9,6 +9,7 @@ ignore =
     # break after binary operator - allow either style
 exclude=
     .git,
+    .venv,
     build,
     dev-requirements,
     venv,

.github/workflows/pytest.yml

@@ -8,27 +8,27 @@ jobs:
         python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
     steps:
     - name: Checkout repository and submodules
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         submodules: recursive
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade pip
-        pip install flake8 pytest
-        pip install .[test]
+        python3 -m pip install --upgrade pip
+        python3 -m pip install flake8 pytest
+        python3 -m pip install .[test]
     - name: Lint with flake8
       run: |
-        python -m flake8
-    - name: Test sorting wioth isort
+        python3 -m flake8
+    - name: Test sorting with isort
       run: |
-        python -m isort --verbose --check-only --diff chaste_codegen tests setup.py
+        python3 -m isort --verbose --check-only --diff chaste_codegen tests setup.py
     - name: Test with pytest
       run: |
-        python -m pytest --cov --cov-config=.coveragerc
-    - uses: codecov/codecov-action@v5
+        python3 -m pytest --cov --cov-config=.coveragerc
+    - uses: codecov/codecov-action@v6
       with:
         token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos