modelseed-api/CITATION.cff at main · ModelSEED/modelseed-api · GitHub

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cff-version: 1.2.0
message: "If you use this software, please cite it as below. Please also cite the associated paper (see preferred-citation)."
type: software
title: "ModelSEED API"
version: 1.0.0
date-released: "2026-09-23"
doi: "10.5281/zenodo.22924803"
repository-code: "https://github.com/ModelSEED/modelseed-api"
url: "https://modelseed.org"
license: MIT
authors:
  - family-names: Faria
    given-names: "J. P."
  - family-names: Henry
    given-names: "C. S."
preferred-citation:
  type: article
  title: "ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction"
  authors:
    - family-names: Faria
      given-names: "J. P."
    - family-names: Liu
      given-names: "F."
    - family-names: Edirisinghe
      given-names: "J. N."
    - family-names: Gupta
      given-names: "N."
    - family-names: Seaver
      given-names: "S. M. D."
    - family-names: Freiburger
      given-names: "A. P."
    - family-names: Setlur
      given-names: "V."
    - family-names: Zhang
      given-names: "Q."
    - family-names: Weisenhorn
      given-names: "P."
    - family-names: Conrad
      given-names: "N."
    - family-names: Zarecki
      given-names: "R."
    - family-names: Song
      given-names: "H.-S."
    - family-names: DeJongh
      given-names: "M."
    - family-names: Best
      given-names: "A. A."
    - family-names: Cottingham
      given-names: "R. W."
    - family-names: Arkin
      given-names: "A. P."
    - family-names: Henry
      given-names: "C. S."
  doi: "10.1101/2023.10.04.556561"
  year: 2026
  journal: "bioRxiv"